S. pennellii RNAseq simulations
Julin Maloof
July 22, 2016
Introduction
Overall Question
When mapping RNAseq reads from a heterologous species to a reference genome, what is the best way to perform the mapping?
For example:
- We have a tomato reference genome
- We want to do RNAseq on a variety of wild relatives of tomato for which we have no genome
Strategy: simulation
- Use S. pennellii and S. lycopersium. Both are sequenced.
- Simulate RNASeq reads from S. pennellii and map to S. lycopersicum.
- Compare actual (simulated) counts to the number of counts that map.
- And different parameters with those aligners.
Preliminaries
Install Polyester
Use the Polyester package to simulate RNAseq reads. Also see the Polyester paper.
Installation. Only needs to be run once per computer.
source("http://bioconductor.org/biocLite.R")
biocLite("polyester")Install STAR (only needs to be done once)
brew install rna-star
brew install gcc5 load libraries and helper scripts
library(polyester)
library(Biostrings)## Loading required package: BiocGenerics## Loading required package: parallel##
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library(Rsubread)
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## cat, commandArgs, getOption, inherits, isOpen, parse, warningslibrary(plyr)##
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## renamesetwd("~/Documents/Lab Notebook support/2015/rnaseq_simulations")
source("Rnaseq_sim_helper_functions.R")Simluate reads (simple version)
Load Spen and Slyc transcripts
Spen CDS fasta can be obtained from SGN slyc fasta is also from SGN
pen.transcripts <- readDNAStringSet("~/Sequences/ref_genomes/S.pen/Spenn-v2-cds-annot.fa")
head(pen.transcripts)## A DNAStringSet instance of length 6
## width seq names
## [1] 264 ATGCGGGTCTATGAGACTGTA...GGCGAACTGAAAGATCTTAG Sopen00g001010.1 ...
## [2] 294 ATGCCTGTTTTACTAGGCGCG...TTAGCGGGCGACAAGCGTAG Sopen00g001020.1 ...
## [3] 798 ATGATTGAATCTCAGAGGCAT...ATTGGTGGGGAGGTATATGA Sopen00g001030.1 ...
## [4] 693 ATGGAACTTTCTCCCCGAGCT...AAGCGAANGGACGTCGGTAA Sopen00g001040.1 ...
## [5] 951 ATGCCCAATAAAAGTAAAAGA...AGAATAAAGAATTTGAATAG Sopen00g001050.1 ...
## [6] 393 ATGATTTGTTTTATGGACAGT...GTTGCTGCTTCCACAGCTAA Sopen00g001060.1 ...names(pen.transcripts[1:10])## [1] "Sopen00g001010.1 hypothetical protein"
## [2] "Sopen00g001020.1 hypothetical protein"
## [3] "Sopen00g001030.1 Cytochrome c oxidase subunit III"
## [4] "Sopen00g001040.1 ATP synthase alpha/beta family, beta-barrel domain"
## [5] "Sopen00g001050.1 Mitochondrial ATP synthase B chain precursor (ATP-synt_B)"
## [6] "Sopen00g001060.1 hypothetical protein"
## [7] "Sopen00g001070.1 hypothetical protein"
## [8] "Sopen00g001080.1 hypothetical protein"
## [9] "Sopen00g001090.1 Reverse transcriptase (RNA-dependent DNA polymerase)"
## [10] "Sopen00g001100.1 Domain of unknown function (DUF4283)"lyc.transcripts <- readDNAStringSet("~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.fasta")
head(lyc.transcripts)## A DNAStringSet instance of length 6
## width seq names
## [1] 1401 ATGTTTGTCCCTTCAATATTT...TTGGCCCTAATATTTGCTAG Solyc00g005000.2....
## [2] 486 ATGTATGTTATATGTAAATGT...CAGTACGTGGATTCAAATAG Solyc00g005020.1....
## [3] 357 ATGGAAGCTGAATACTTCCCT...ATTATCCACTGTTTTTTTAA Solyc00g005040.2....
## [4] 588 ATGGCGGTGAATCCTCAACTA...CATACCAGTCAACCAGCTGA Solyc00g005050.2....
## [5] 273 ATGCTAGTGTGTGTTGGGGTT...TTAAGGCACTACGCCTCTAG Solyc00g005060.1....
## [6] 81 ATGCTTCTAGCTTGGACTGGA...GACTAGCTTCTTATGTTTAG Solyc00g005070.1....names(lyc.transcripts)[1:10]## [1] "Solyc00g005000.2.1 genomic_reference:SL2.50ch00 gene_region:16437-18189 transcript_region:SL2.50ch00:16437..18189+ go_terms:GO:0006508 functional_description:\"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 \""
## [2] "Solyc00g005020.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:68062-68764 transcript_region:SL2.50ch00:68062..68764+ functional_description:\"Unknown Protein (AHRD V1)\""
## [3] "Solyc00g005040.2.1 genomic_reference:SL2.50ch00 gene_region:550920-551576 transcript_region:SL2.50ch00:550920..551576+ functional_description:\"Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding \""
## [4] "Solyc00g005050.2.1 genomic_reference:SL2.50ch00 gene_region:570544-575454 transcript_region:SL2.50ch00:570544..575454- functional_description:\"Arabinogalactan protein (AHRD V1 ***- B6SST2_MAIZE)\""
## [5] "Solyc00g005060.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:723746-724018 transcript_region:SL2.50ch00:723746..724018- functional_description:\"Unknown Protein (AHRD V1)\""
## [6] "Solyc00g005070.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:755300-755543 transcript_region:SL2.50ch00:755300..755543- functional_description:\"Unknown Protein (AHRD V1)\""
## [7] "Solyc00g005080.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch00 gene_region:791493-792010 transcript_region:SL2.50ch00:791493..792010- functional_description:\"Ycf2 (AHRD V1 ***- A6YA23_9MAGN)\""
## [8] "Solyc00g005090.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:1061638-1061922 transcript_region:SL2.50ch00:1061638..1061922- functional_description:\"Unknown Protein (AHRD V1)\""
## [9] "Solyc00g005100.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:1115784-1117712 transcript_region:SL2.50ch00:1115784..1117712+ functional_description:\"Unknown Protein (AHRD V1)\""
## [10] "Solyc00g005110.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch00 gene_region:1124582-1125325 transcript_region:SL2.50ch00:1124582..1125325- functional_description:\"Unknown Protein (AHRD V1)\""Reformat names to get rid of description and add Slyc reference
orthologs <- read.delim("Ortho_v2.txt",header=FALSE) #From Tony Bolger
head(orthologs)## V1 V2
## 1 Sopen03g006680.t1 Solyc04g024690.1.1
## 2 Sopen08g027370.t1 Solyc08g078910.1.1
## 3 Sopen05g001030.t1 Solyc05g005020.2.1
## 4 Sopen03g037380.t1 Solyc03g118500.2.1
## 5 Sopen06g031780.t1 Solyc06g075360.2.1
## 6 Sopen04g003290.t1 Solyc04g008120.1.1names(orthologs) <- c("PEN","LYC")
orthologs$PEN <- sub("t","",orthologs$PEN)
orthologs$PEN.LYC <- paste(orthologs$PEN,orthologs$LYC,sep="_")
names(pen.transcripts) <- substr(names(pen.transcripts),1,16)
names(pen.transcripts) <- ifelse(!is.na(match(names(pen.transcripts),orthologs$PEN)),
orthologs$PEN.LYC[match(names(pen.transcripts),orthologs$PEN)],
names(pen.transcripts))
pen.transcripts## A DNAStringSet instance of length 48923
## width seq names
## [1] 264 ATGCGGGTCTATGAGACTG...CGAACTGAAAGATCTTAG Sopen00g001010.1_...
## [2] 294 ATGCCTGTTTTACTAGGCG...AGCGGGCGACAAGCGTAG Sopen00g001020.1
## [3] 798 ATGATTGAATCTCAGAGGC...TGGTGGGGAGGTATATGA Sopen00g001030.1_...
## [4] 693 ATGGAACTTTCTCCCCGAG...GCGAANGGACGTCGGTAA Sopen00g001040.1_...
## [5] 951 ATGCCCAATAAAAGTAAAA...AATAAAGAATTTGAATAG Sopen00g001050.1_...
## ... ... ...
## [48919] 3924 ATGTCTGCTTTGAACGTGA...AACATCAGAAGCTGTTAA Sopen12g034990.1
## [48920] 3810 ATGGATAGTTCGAAGCTTG...CATCGTGATGAAGGCTGA Sopen12g035000.1
## [48921] 345 ATGAATCTTGGAGGCATAA...ATACAGAGTAAACTTTAG Sopen12g035010.1_...
## [48922] 447 ATGTCGTTAACATATTTTC...GGTCATACTCACACATAA Sopen12g035020.1
## [48923] 6429 ATGGAAGGAAATGAGCATG...AGTCTTGAAACTTTATAA Sopen12g035030.1_...names(lyc.transcripts) <- substr(names(lyc.transcripts),1,18)
names(lyc.transcripts) <- ifelse(!is.na(match(names(lyc.transcripts),orthologs$LYC)),
orthologs$PEN.LYC[match(names(lyc.transcripts),orthologs$LYC)],
names(lyc.transcripts))
pen.gene.length <- as.integer(nchar(pen.transcripts))
names(pen.gene.length) <- names(pen.transcripts)
lyc.gene.length <- as.integer(nchar(lyc.transcripts))
names(lyc.gene.length) <- names(lyc.transcripts)Limit ourselves to genes where orthology is clear:
pen.transcripts.small <- pen.transcripts[nchar(names(pen.transcripts))>16]
lyc.transcripts.small <- lyc.transcripts[nchar(names(lyc.transcripts)) > 18]
if(! file.exists("~/Sequences/ref_genomes/S.pen/Spenn-v2-cds-annot_orthlogs_only.fa")) writeXStringSet(pen.transcripts.small,file="~/Sequences/ref_genomes/S.pen/Spenn-v2-cds-annot_orthlogs_only.fa")
if(! file.exists("~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fasta")) writeXStringSet(lyc.transcripts.small,file="~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fasta")Simulate PEN RNAseq reads
#3 minutes for 1M reads
#15 minutes for 5M reads
system.time(
simulate_experiment(fasta="~/Sequences/ref_genomes/S.pen/Spenn-v2-cds-annot_orthlogs_only.fa",
outdir="spen_sim_2",
num_reps=1,
readlen=45,
#line below gives ~ 10M reads, scaled by transcript length and following a rexp distribution
reads_per_transcript = round(rexp(n=length(pen.transcripts.small)) * width(pen.transcripts.small) *
1e7/ sum(width(pen.transcripts.small) ))+1,
paired=FALSE,
error_model="illumina5",
bias="rnaf"
)
)
system("sed 's!/!;!' spen_sim_2/sample_01.fasta > spen_sim_2/sample_01_renamed.fasta") #this allows original gene_names to be kept
system("rm spen_sim_2/sample_01.fasta")
system("gzip spen_sim_2/sample_01_renamed.fasta")Simulate LYC RNAseq reads
system.time(
simulate_experiment(fasta="~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fasta",
outdir="slyc_sim_2",
num_reps=1,
readlen=45,
#line below gives ~ 10M reads, scaled by transcript length and following a rexp distribution
reads_per_transcript = round(rexp(n=length(lyc.transcripts.small)) * width(lyc.transcripts.small) *
1e7/ sum(width(lyc.transcripts.small) ))+1,
paired=FALSE,
error_model="illumina5",
bias="rnaf"
)
)
system("sed 's!/!;!' slyc_sim_2/sample_01.fasta > slyc_sim_2/sample_01_renamed.fasta") #this allows original gene_names to be kept
system("rm slyc_sim_2/sample_01.fasta")
system("gzip slyc_sim_2/sample_01_renamed.fasta")calculate known counts
Use external python script
pen.known.counts <- read.table(pipe("./CountGene.py spen_sim_2/sample_01_renamed.fasta.gz"),col.names=c("id","count"),stringsAsFactors = FALSE)
pen.known.counts$lyc.id <- substr(pen.known.counts$id,18,33)
head(pen.known.counts)## id count lyc.id
## 1 Sopen07g034180.1_Solyc07g065980.2.1 2771 Solyc07g065980.2
## 2 Sopen11g004230.1_Solyc11g008440.1.1 120 Solyc11g008440.1
## 3 Sopen02g006420.1_Solyc02g022830.2.1 746 Solyc02g022830.2
## 4 Sopen08g029390.1_Solyc08g081070.2.1 673 Solyc08g081070.2
## 5 Sopen12g002150.1_Solyc12g006190.1.1 219 Solyc12g006190.1
## 6 Sopen08g024690.1_Solyc08g076040.1.1 279 Solyc08g076040.1lyc.known.counts <- read.table(pipe("./CountGene.py slyc_sim_2/sample_01_renamed.fasta.gz"),col.names=c("id","count"),stringsAsFactors = FALSE)
lyc.known.counts$lyc.id <- substr(lyc.known.counts$id,18,33)
head(lyc.known.counts)## id count lyc.id
## 1 Sopen10g026850.1_Solyc10g062180.1.1 553 Solyc10g062180.1
## 2 Sopen01g052320.1_Solyc01g110160.2.1 233 Solyc01g110160.2
## 3 Sopen03g002160.1_Solyc03g006150.2.1 378 Solyc03g006150.2
## 4 Sopen08g002520.1_Solyc08g006560.2.1 1067 Solyc08g006560.2
## 5 Sopen03g032230.1_Solyc03g113170.1.1 114 Solyc03g113170.1
## 6 Sopen07g030860.1_Solyc07g062630.1.1 697 Solyc07g062630.1Map with star
Create genome file
Only needs to be done once
This is a shell command
Takes about 25 minutes
gffread -T ITAG2.4_gene_models.gff3 -o ITAG2.4_gene_models.gtf
STAR --runThreadN 6 --runMode genomeGenerate --genomeDir ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/STAR_genome --genomeFastaFiles ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/S_lycopersicum_chromosomes.2.50.fa --sjdbGTFfile ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_gene_models.gtfCreate parameters files
cat > STAR.params.whitney.1
genomeDir /Network/Servers/avalanche.plb.ucdavis.edu/Volumes/Mammoth/Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/STAR_genome
outSAMtype BAM SortedByCoordinate
outSAMunmapped Within
quantMode GeneCountsRun it!
RunStar(fasta="sample_01_renamed.fasta.gz",prefix = "STAR_1", param.file = "../STAR.params.whitney.1", dir="spen_sim_2",n=12)
RunStar(fasta="sample_01_renamed.fasta.gz",prefix = "STAR_1", param.file = "../STAR.params.whitney.1", dir="slyc_sim_2",n=12)Evaluate results from STAR
We want to do:
- correlation between known counts and found counts
- how many reads map to the wrong gene?
- how many reads do not map?
- are the splice junctions correct?
Load in mapped counts
#using the STAR built-in counter
#pen.mapped.counts.STAR <- GetMappedCounts(prefix = "STAR_1", dir = "spen_sim_2")
#lyc.mapped.counts.STAR <- GetMappedCounts(prefix = "STAR_1", dir = "slyc_sim_2")
#using featureCounts from Rsubread
pen.mapped.counts <- GetMappedCounts(prefix = "STAR_1", dir = "spen_sim_2", type="STAR-featureCounts")##
## ========== _____ _ _ ____ _____ ______ _____
## ===== / ____| | | | _ \| __ \| ____| /\ | __ \
## ===== | (___ | | | | |_) | |__) | |__ / \ | | | |
## ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
## ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
## ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
## Rsubread 1.20.2
##
## //========================== featureCounts setting ===========================\\
## || ||
## || Input files : 1 BAM file ||
## || S spen_sim_2/STAR_1Aligned.sortedByCoord.out ... ||
## || ||
## || Output file : ./.Rsubread_featureCounts_pid31851 ||
## || Annotations : /Users/jmaloof/Sequences/ref_genomes/tomato/ ... ||
## || ||
## || Threads : 2 ||
## || Level : meta-feature level ||
## || Paired-end : no ||
## || Strand specific : no ||
## || Multimapping reads : not counted ||
## || Multi-overlapping reads : counted ||
## || Read orientations : fr ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//
##
## //================================= Running ==================================\\
## || ||
## || Load annotation file /Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2 ... ||
## || Features : 160001 ||
## || Meta-features : 34725 ||
## || Chromosomes/contigs : 13 ||
## || ||
## || Process BAM file spen_sim_2/STAR_1Aligned.sortedByCoord.out.bam... ||
## || Single-end reads are included. ||
## || Assign reads to features... ||
## || Total reads : 10519873 ||
## || Successfully assigned reads : 9117312 (86.7%) ||
## || Running time : 0.25 minutes ||
## || ||
## || Read assignment finished. ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//lyc.mapped.counts <- GetMappedCounts(prefix = "STAR_1", dir = "slyc_sim_2", type="STAR-featureCounts")##
## ========== _____ _ _ ____ _____ ______ _____
## ===== / ____| | | | _ \| __ \| ____| /\ | __ \
## ===== | (___ | | | | |_) | |__) | |__ / \ | | | |
## ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
## ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
## ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
## Rsubread 1.20.2
##
## //========================== featureCounts setting ===========================\\
## || ||
## || Input files : 1 BAM file ||
## || S slyc_sim_2/STAR_1Aligned.sortedByCoord.out ... ||
## || ||
## || Output file : ./.Rsubread_featureCounts_pid31851 ||
## || Annotations : /Users/jmaloof/Sequences/ref_genomes/tomato/ ... ||
## || ||
## || Threads : 2 ||
## || Level : meta-feature level ||
## || Paired-end : no ||
## || Strand specific : no ||
## || Multimapping reads : not counted ||
## || Multi-overlapping reads : counted ||
## || Read orientations : fr ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//
##
## //================================= Running ==================================\\
## || ||
## || Load annotation file /Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2 ... ||
## || Features : 160001 ||
## || Meta-features : 34725 ||
## || Chromosomes/contigs : 13 ||
## || ||
## || Process BAM file slyc_sim_2/STAR_1Aligned.sortedByCoord.out.bam... ||
## || Single-end reads are included. ||
## || Assign reads to features... ||
## || Total reads : 10360234 ||
## || Successfully assigned reads : 9840016 (95.0%) ||
## || Running time : 0.28 minutes ||
## || ||
## || Read assignment finished. ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//S. pennellii
Compare known to mapped counts
For many genes this is pretty good, but for some it is pretty poor. Is this due to S. pen?
S. lycopersicum
Compare known to mapped counts
S. lyc maps much better. What is messing up the S. pen mapping?
Investigate…
Lets take a look at the bam file and extract reads from a few genes with 0 mapped reads.
Reads plotted by genes hit and mismatches
Gene length effects
## Warning in self$trans$transform(x): NaNs produced## Warning: Removed 5271 rows containing missing values (geom_point).
Gene length effects 2
Remove genes
Remove genes with gene length ratio > 1.3 or gene length difference > 300bp 
how many reads map to the wrong gene?
mismapping
Total mismapping
with(reads.df.map.single.overlap,sum(mismap) / length(mismap))## [1] 0.03214682Of mismaps, what proportion map near to the correct gene:
with(reads.df.map.single.overlap,sum(mapnear & mismap) / sum(mismap))## [1] 0.696074Proportion reads mapped to wrong gene (distant):
sum(reads.df.map.single.overlap$mismap[!reads.df.map.single.overlap$mapnear]) / nrow(reads.df.map.single.overlap)## [1] 0.009770255why mismapping?
Investigate by looking at where S.pen genes map on S.lyc chromosomes.
Are the S. pen “Orthlogs” really mapping to their cognate S.lyc gene?
Use BLAT to map S. pen predicted cDNAs to S. lyc genome.
Map real reads as comparision
Now look in IGV (Note: Need to use IGVtools to sort and index the .psl file)
head(reads.df.map.single.overlap[reads.df.map.single.overlap$mismap,c("qname","gene.lyc","gene.mapped.to","mapnear")],100)## qname
## 104688 read3816600;Sopen04g012680.1_Solyc04g025530.2.1;mate1:518-562;mate2:723-766
## 104689 read3816832;Sopen04g012680.1_Solyc04g025530.2.1;mate1:723-767;mate2:936-979
## 105406 read69730;Sopen01g001170.1_Solyc01g005140.2.1;mate1:198-242;mate2:381-424
## 107225 read3611020;Sopen04g003410.1_Solyc04g008290.2.1;mate1:840-884;mate2:1073-1116
## 108529 read3609833;Sopen04g003330.1_Solyc04g008210.1.1;mate1:568-612;mate2:809-852
## 116584 read76333;Sopen01g001290.1_Solyc01g005260.2.1;mate1:137-181;mate2:359-402
## 116594 read76843;Sopen01g001290.1_Solyc01g005260.2.1;mate1:128-172;mate2:350-393
## 116595 read76556;Sopen01g001290.1_Solyc01g005260.2.1;mate1:127-171;mate2:369-412
## 116596 read76729;Sopen01g001290.1_Solyc01g005260.2.1;mate1:126-170;mate2:321-364
## 116597 read76737;Sopen01g001290.1_Solyc01g005260.2.1;mate1:125-169;mate2:323-366
## 116598 read76609;Sopen01g001290.1_Solyc01g005260.2.1;mate1:124-168;mate2:359-402
## 116599 read76220;Sopen01g001290.1_Solyc01g005260.2.1;mate1:122-166;mate2:331-374
## 116600 read76235;Sopen01g001290.1_Solyc01g005260.2.1;mate1:122-166;mate2:382-425
## 116653 read76164;Sopen01g001290.1_Solyc01g005260.2.1;mate1:76-120;mate2:276-319
## 116656 read76276;Sopen01g001290.1_Solyc01g005260.2.1;mate1:75-119;mate2:252-295
## 116657 read76944;Sopen01g001290.1_Solyc01g005260.2.1;mate1:75-119;mate2:312-355
## 116658 read76787;Sopen01g001290.1_Solyc01g005260.2.1;mate1:74-118;mate2:290-333
## 116660 read76550;Sopen01g001290.1_Solyc01g005260.2.1;mate1:73-117;mate2:295-338
## 116661 read76804;Sopen01g001290.1_Solyc01g005260.2.1;mate1:73-117;mate2:344-387
## 116662 read76912;Sopen01g001290.1_Solyc01g005260.2.1;mate1:72-116;mate2:234-277
## 116663 read76980;Sopen01g001290.1_Solyc01g005260.2.1;mate1:70-114;mate2:280-323
## 116665 read76533;Sopen01g001290.1_Solyc01g005260.2.1;mate1:68-112;mate2:261-304
## 116666 read76581;Sopen01g001290.1_Solyc01g005260.2.1;mate1:67-111;mate2:267-310
## 116667 read77093;Sopen01g001290.1_Solyc01g005260.2.1;mate1:67-111;mate2:230-273
## 116669 read76548;Sopen01g001290.1_Solyc01g005260.2.1;mate1:66-110;mate2:274-317
## 116670 read77063;Sopen01g001290.1_Solyc01g005260.2.1;mate1:65-109;mate2:280-323
## 116671 read76595;Sopen01g001290.1_Solyc01g005260.2.1;mate1:62-106;mate2:297-340
## 116672 read76219;Sopen01g001290.1_Solyc01g005260.2.1;mate1:61-105;mate2:272-315
## 116700 read77226;Sopen01g001300.1_Solyc01g005270.2.1;mate1:310-354;mate2:455-498
## 116704 read77233;Sopen01g001300.1_Solyc01g005270.2.1;mate1:445-489;mate2:671-714
## 116833 read77216;Sopen01g001300.1_Solyc01g005270.2.1;mate1:402-446;mate2:573-616
## 116834 read77214;Sopen01g001300.1_Solyc01g005270.2.1;mate1:400-444;mate2:567-610
## 116839 read77346;Sopen01g001310.1_Solyc01g005280.2.1;mate1:393-437;mate2:627-670
## 117063 read77828;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1595-1639;mate2:1768-1811
## 117064 read77579;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1469-1513;mate2:1692-1735
## 117065 read77649;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1488-1532;mate2:1691-1734
## 117066 read77915;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1495-1539;mate2:1691-1734
## 117067 read77718;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1462-1506;mate2:1676-1719
## 117068 read77902;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1488-1532;mate2:1674-1717
## 117069 read77961;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1430-1474;mate2:1645-1688
## 117070 read77818;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1430-1474;mate2:1628-1671
## 117071 read77980;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1413-1457;mate2:1612-1655
## 117072 read77628;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1403-1447;mate2:1596-1639
## 117073 read77731;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1421-1465;mate2:1594-1637
## 117074 read77722;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1364-1408;mate2:1583-1626
## 117075 read77963;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1373-1417;mate2:1582-1625
## 117076 read77695;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1558-1602;mate2:1738-1781
## 117077 read77534;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1313-1357;mate2:1556-1599
## 117078 read77884;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1555-1599;mate2:1754-1797
## 117079 read77749;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1331-1375;mate2:1553-1596
## 117080 read77981;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1292-1336;mate2:1541-1584
## 117081 read77560;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1321-1365;mate2:1536-1579
## 117082 read77790;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1338-1382;mate2:1533-1576
## 117083 read77812;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1352-1396;mate2:1531-1574
## 117084 read77771;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1287-1331;mate2:1524-1567
## 117085 read77667;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1303-1347;mate2:1521-1564
## 117086 read77536;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1510-1554;mate2:1739-1782
## 117087 read77894;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1295-1339;mate2:1504-1547
## 117088 read77720;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1302-1346;mate2:1503-1546
## 117089 read77889;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1300-1344;mate2:1503-1546
## 117090 read77760;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1309-1353;mate2:1501-1544
## 117091 read77608;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1491-1535;mate2:1691-1734
## 117092 read77670;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1271-1315;mate2:1490-1533
## 117093 read77832;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1284-1328;mate2:1488-1531
## 117094 read77675;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1312-1356;mate2:1481-1524
## 117095 read77942;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1264-1308;mate2:1473-1516
## 117096 read77687;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1267-1311;mate2:1472-1515
## 117097 read77615;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1218-1262;mate2:1465-1508
## 117098 read77883;Sopen01g001330.1_Solyc01g005310.2.1;mate1:1240-1284;mate2:1459-1502
## 123847 read85096;Sopen01g001610.1_Solyc01g005580.2.1;mate1:279-323;mate2:491-534
## 123848 read85123;Sopen01g001610.1_Solyc01g005580.2.1;mate1:306-350;mate2:489-532
## 123849 read85090;Sopen01g001610.1_Solyc01g005580.2.1;mate1:258-302;mate2:488-531
## 123859 read85125;Sopen01g001610.1_Solyc01g005580.2.1;mate1:167-211;mate2:406-449
## 123860 read85158;Sopen01g001610.1_Solyc01g005580.2.1;mate1:161-205;mate2:393-436
## 124280 read86088;Sopen01g001630.1_Solyc01g005610.2.1;mate1:19-63;mate2:224-267
## 124281 read86983;Sopen01g001630.1_Solyc01g005610.2.1;mate1:18-62;mate2:250-293
## 124282 read87453;Sopen01g001630.1_Solyc01g005610.2.1;mate1:20-64;mate2:201-244
## 124283 read86548;Sopen01g001630.1_Solyc01g005610.2.1;mate1:22-66;mate2:137-180
## 124284 read85545;Sopen01g001630.1_Solyc01g005610.2.1;mate1:26-70;mate2:216-259
## 124285 read86052;Sopen01g001630.1_Solyc01g005610.2.1;mate1:30-74;mate2:268-311
## 124286 read86324;Sopen01g001630.1_Solyc01g005610.2.1;mate1:32-76;mate2:244-287
## 124287 read86779;Sopen01g001630.1_Solyc01g005610.2.1;mate1:32-76;mate2:240-283
## 124288 read87286;Sopen01g001630.1_Solyc01g005610.2.1;mate1:34-78;mate2:191-234
## 124289 read85914;Sopen01g001630.1_Solyc01g005610.2.1;mate1:38-82;mate2:249-292
## 124290 read86006;Sopen01g001630.1_Solyc01g005610.2.1;mate1:38-82;mate2:255-298
## 128661 read93641;Sopen01g001870.1_Solyc01g005760.2.1;mate1:348-392;mate2:552-595
## 128662 read92467;Sopen01g001870.1_Solyc01g005760.2.1;mate1:349-393;mate2:547-590
## 128663 read94196;Sopen01g001870.1_Solyc01g005760.2.1;mate1:351-395;mate2:540-583
## 128677 read89946;Sopen01g001730.1_Solyc01g009690.1.1;mate1:496-540;mate2:668-711
## 128678 read90081;Sopen01g001730.1_Solyc01g009690.1.1;mate1:437-481;mate2:672-715
## 128679 read92304;Sopen01g001870.1_Solyc01g005760.2.1;mate1:358-402;mate2:644-687
## 128680 read92361;Sopen01g001870.1_Solyc01g005760.2.1;mate1:648-692;mate2:860-903
## 128681 read92867;Sopen01g001870.1_Solyc01g005760.2.1;mate1:649-693;mate2:859-902
## 128682 read94365;Sopen01g001870.1_Solyc01g005760.2.1;mate1:648-692;mate2:860-903
## 128685 read89849;Sopen01g001730.1_Solyc01g009690.1.1;mate1:672-716;mate2:888-931
## 128686 read93073;Sopen01g001870.1_Solyc01g005760.2.1;mate1:411-455;mate2:652-695
## 128687 read93527;Sopen01g001870.1_Solyc01g005760.2.1;mate1:651-695;mate2:852-895
## 128688 read92561;Sopen01g001870.1_Solyc01g005760.2.1;mate1:652-696;mate2:851-894
## 128689 read93080;Sopen01g001870.1_Solyc01g005760.2.1;mate1:439-483;mate2:655-698
## 128690 read93299;Sopen01g001870.1_Solyc01g005760.2.1;mate1:439-483;mate2:653-696
## gene.lyc gene.mapped.to mapnear
## 104688 Solyc04g025530.2.1 Solyc01g005000.2.1 FALSE
## 104689 Solyc04g025530.2.1 Solyc01g005000.2.1 FALSE
## 105406 Solyc01g005140.2.1 Solyc01g005030.2.1 FALSE
## 107225 Solyc04g008290.2.1 Solyc01g005080.2.1 FALSE
## 108529 Solyc04g008210.1.1 Solyc01g005120.2.1 FALSE
## 116584 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116594 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116595 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116596 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116597 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116598 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116599 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116600 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116653 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116656 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116657 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116658 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116660 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116661 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116662 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116663 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116665 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116666 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116667 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116669 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116670 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116671 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116672 Solyc01g005260.2.1 Solyc01g005270.2.1 TRUE
## 116700 Solyc01g005270.2.1 Solyc01g005280.2.1 TRUE
## 116704 Solyc01g005270.2.1 Solyc01g005280.2.1 TRUE
## 116833 Solyc01g005270.2.1 Solyc01g005290.2.1 TRUE
## 116834 Solyc01g005270.2.1 Solyc01g005290.2.1 TRUE
## 116839 Solyc01g005280.2.1 Solyc01g005290.2.1 TRUE
## 117063 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117064 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117065 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117066 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117067 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117068 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117069 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117070 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117071 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117072 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117073 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117074 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117075 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117076 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117077 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117078 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117079 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117080 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117081 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117082 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117083 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117084 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117085 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117086 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117087 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117088 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117089 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117090 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117091 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117092 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117093 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117094 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117095 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117096 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117097 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 117098 Solyc01g005310.2.1 Solyc01g005300.2.1 TRUE
## 123847 Solyc01g005580.2.1 Solyc01g005570.2.1 TRUE
## 123848 Solyc01g005580.2.1 Solyc01g005570.2.1 TRUE
## 123849 Solyc01g005580.2.1 Solyc01g005570.2.1 TRUE
## 123859 Solyc01g005580.2.1 Solyc01g005570.2.1 TRUE
## 123860 Solyc01g005580.2.1 Solyc01g005570.2.1 TRUE
## 124280 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124281 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124282 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124283 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124284 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124285 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124286 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124287 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124288 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124289 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 124290 Solyc01g005610.2.1 Solyc01g005600.2.1 TRUE
## 128661 Solyc01g005760.2.1 Solyc01g005710.2.1 FALSE
## 128662 Solyc01g005760.2.1 Solyc01g005710.2.1 FALSE
## 128663 Solyc01g005760.2.1 Solyc01g005710.2.1 FALSE
## 128677 Solyc01g009690.1.1 Solyc01g005720.2.1 FALSE
## 128678 Solyc01g009690.1.1 Solyc01g005720.2.1 FALSE
## 128679 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128680 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128681 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128682 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128685 Solyc01g009690.1.1 Solyc01g005720.2.1 FALSE
## 128686 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128687 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128688 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128689 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSE
## 128690 Solyc01g005760.2.1 Solyc01g005720.2.1 FALSEsort(table(reads.df.map.single.overlap$gene.lyc[reads.df.map.single.overlap$mismap]))##
## Solyc01g005060.2.1 Solyc01g005140.2.1 Solyc01g005280.2.1
## 1 1 1
## Solyc01g006120.2.1 Solyc01g006440.1.1 Solyc01g006490.2.1
## 1 1 1
## Solyc01g006730.2.1 Solyc01g007070.2.1 Solyc01g007330.2.1
## 1 1 1
## Solyc01g007340.2.1 Solyc01g008530.2.1 Solyc01g008640.2.1
## 1 1 1
## Solyc01g008690.2.1 Solyc01g008840.2.1 Solyc01g009300.2.1
## 1 1 1
## Solyc01g009360.1.1 Solyc01g009420.2.1 Solyc01g009530.1.1
## 1 1 1
## Solyc01g010480.2.1 Solyc01g028930.2.1 Solyc01g044510.1.1
## 1 1 1
## Solyc01g060020.2.1 Solyc01g066250.1.1 Solyc01g066620.2.1
## 1 1 1
## Solyc01g067960.1.1 Solyc01g068150.2.1 Solyc01g068550.2.1
## 1 1 1
## Solyc01g073750.2.1 Solyc01g073840.1.1 Solyc01g079670.2.1
## 1 1 1
## Solyc01g079750.2.1 Solyc01g080910.2.1 Solyc01g081100.1.1
## 1 1 1
## Solyc01g086990.2.1 Solyc01g087430.2.1 Solyc01g087680.2.1
## 1 1 1
## Solyc01g088560.2.1 Solyc01g090430.2.1 Solyc01g090820.1.1
## 1 1 1
## Solyc01g090990.2.1 Solyc01g091690.2.1 Solyc01g094070.2.1
## 1 1 1
## Solyc01g094080.2.1 Solyc01g095100.2.1 Solyc01g095490.2.1
## 1 1 1
## Solyc01g095830.2.1 Solyc01g095960.2.1 Solyc01g097610.2.1
## 1 1 1
## Solyc01g098590.2.1 Solyc01g099200.2.1 Solyc01g099390.2.1
## 1 1 1
## Solyc01g100530.2.1 Solyc01g100570.2.1 Solyc01g100800.1.1
## 1 1 1
## Solyc01g103140.2.1 Solyc01g104800.2.1 Solyc01g105030.2.1
## 1 1 1
## Solyc01g105050.2.1 Solyc01g106480.2.1 Solyc01g106750.1.1
## 1 1 1
## Solyc01g107930.2.1 Solyc01g107960.2.1 Solyc01g108010.2.1
## 1 1 1
## Solyc01g108940.1.1 Solyc01g109490.2.1 Solyc01g111340.2.1
## 1 1 1
## Solyc01g111440.2.1 Solyc01g111640.2.1 Solyc01g111900.2.1
## 1 1 1
## Solyc01g111980.2.1 Solyc01g112100.2.1 Solyc02g021680.2.1
## 1 1 1
## Solyc02g031790.1.1 Solyc02g032330.2.1 Solyc02g032730.1.1
## 1 1 1
## Solyc02g036230.1.1 Solyc02g036450.2.1 Solyc02g061960.2.1
## 1 1 1
## Solyc02g062670.2.1 Solyc02g062740.2.1 Solyc02g063170.2.1
## 1 1 1
## Solyc02g063220.2.1 Solyc02g065230.2.1 Solyc02g065740.2.1
## 1 1 1
## Solyc02g066980.1.1 Solyc02g067040.2.1 Solyc02g067570.2.1
## 1 1 1
## Solyc02g068430.2.1 Solyc02g068590.2.1 Solyc02g069650.1.1
## 1 1 1
## Solyc02g070200.1.1 Solyc02g071350.2.1 Solyc02g071540.1.1
## 1 1 1
## Solyc02g072050.1.1 Solyc02g072190.2.1 Solyc02g077030.2.1
## 1 1 1
## Solyc02g077390.1.1 Solyc02g078840.2.1 Solyc02g079040.2.1
## 1 1 1
## Solyc02g079540.1.1 Solyc02g080800.2.1 Solyc02g082110.2.1
## 1 1 1
## Solyc02g082320.1.1 Solyc02g082720.2.1 Solyc02g083700.2.1
## 1 1 1
## Solyc02g084110.1.1 Solyc02g084960.1.1 Solyc02g085500.2.1
## 1 1 1
## Solyc02g086180.2.1 Solyc02g087030.1.1 Solyc02g087790.1.1
## 1 1 1
## Solyc02g087950.2.1 Solyc02g088320.2.1 Solyc02g088670.1.1
## 1 1 1
## Solyc02g089620.2.1 Solyc02g090510.2.1 Solyc02g090730.2.1
## 1 1 1
## Solyc02g091470.2.1 Solyc02g091580.2.1 Solyc02g093320.2.1
## 1 1 1
## Solyc02g093330.2.1 Solyc02g093500.2.1 Solyc03g005080.2.1
## 1 1 1
## Solyc03g005560.1.1 Solyc03g005920.2.1 Solyc03g006530.2.1
## 1 1 1
## Solyc03g006840.2.1 Solyc03g019660.2.1 Solyc03g025670.2.1
## 1 1 1
## Solyc03g026020.2.1 Solyc03g031490.2.1 Solyc03g032020.2.1
## 1 1 1
## Solyc03g033690.1.1 Solyc03g033790.2.1 Solyc03g033820.1.1
## 1 1 1
## Solyc03g034270.2.1 Solyc03g043580.1.1 Solyc03g043930.2.1
## 1 1 1
## Solyc03g046420.1.1 Solyc03g059420.2.1 Solyc03g063300.1.1
## 1 1 1
## Solyc03g071550.1.1 Solyc03g078260.2.1 Solyc03g078520.2.1
## 1 1 1
## Solyc03g080070.2.1 Solyc03g082390.2.1 Solyc03g082620.2.1
## 1 1 1
## Solyc03g082750.1.1 Solyc03g083270.2.1 Solyc03g083390.2.1
## 1 1 1
## Solyc03g083820.1.1 Solyc03g093890.2.1 Solyc03g095500.2.1
## 1 1 1
## Solyc03g095980.2.1 Solyc03g096900.2.1 Solyc03g098200.2.1
## 1 1 1
## Solyc03g098640.2.1 Solyc03g111860.1.1 Solyc03g112300.2.1
## 1 1 1
## Solyc03g113040.2.1 Solyc03g113060.2.1 Solyc03g113410.1.1
## 1 1 1
## Solyc03g113580.1.1 Solyc03g113800.2.1 Solyc03g114400.2.1
## 1 1 1
## Solyc03g114850.2.1 Solyc03g115120.1.1 Solyc03g115840.2.1
## 1 1 1
## Solyc03g116380.2.1 Solyc03g117170.1.1 Solyc03g117820.1.1
## 1 1 1
## Solyc03g118090.2.1 Solyc03g119150.2.1 Solyc03g119390.2.1
## 1 1 1
## Solyc03g120210.1.1 Solyc03g120470.2.1 Solyc03g120520.1.1
## 1 1 1
## Solyc03g120970.2.1 Solyc03g121410.2.1 Solyc03g121570.2.1
## 1 1 1
## Solyc03g121590.2.1 Solyc03g121980.2.1 Solyc04g005720.2.1
## 1 1 1
## Solyc04g007650.2.1 Solyc04g007680.2.1 Solyc04g007750.2.1
## 1 1 1
## Solyc04g008010.2.1 Solyc04g008210.1.1 Solyc04g008290.2.1
## 1 1 1
## Solyc04g008560.2.1 Solyc04g009620.2.1 Solyc04g009640.2.1
## 1 1 1
## Solyc04g009820.2.1 Solyc04g010260.2.1 Solyc04g011350.2.1
## 1 1 1
## Solyc04g011720.2.1 Solyc04g014270.2.1 Solyc04g014470.2.1
## 1 1 1
## Solyc04g018210.1.1 Solyc04g025880.2.1 Solyc04g039640.2.1
## 1 1 1
## Solyc04g050010.1.1 Solyc04g050730.2.1 Solyc04g050750.1.1
## 1 1 1
## Solyc04g056460.1.1 Solyc04g064680.2.1 Solyc04g064860.1.1
## 1 1 1
## Solyc04g071080.1.1 Solyc04g071750.2.1 Solyc04g074360.1.1
## 1 1 1
## Solyc04g074930.2.1 Solyc04g076220.2.1 Solyc04g076230.2.1
## 1 1 1
## Solyc04g076650.1.1 Solyc04g077360.2.1 Solyc04g077890.1.1
## 1 1 1
## Solyc04g078130.2.1 Solyc04g078160.2.1 Solyc04g079070.2.1
## 1 1 1
## Solyc04g079530.2.1 Solyc04g080300.2.1 Solyc04g081200.2.1
## 1 1 1
## Solyc04g082220.1.1 Solyc04g082290.2.1 Solyc04g082630.2.1
## 1 1 1
## Solyc04g082980.1.1 Solyc05g005130.1.1 Solyc05g005710.2.1
## 1 1 1
## Solyc05g005910.2.1 Solyc05g006130.2.1 Solyc05g006210.2.1
## 1 1 1
## Solyc05g007000.2.1 Solyc05g007660.2.1 Solyc05g009230.1.1
## 1 1 1
## Solyc05g009400.1.1 Solyc05g010010.1.1 Solyc05g010220.1.1
## 1 1 1
## Solyc05g010460.2.1 Solyc05g012050.2.1 Solyc05g013040.2.1
## 1 1 1
## Solyc05g013160.2.1 Solyc05g013280.2.1 Solyc05g013340.2.1
## 1 1 1
## Solyc05g013770.2.1 Solyc05g014470.2.1 Solyc05g015160.2.1
## 1 1 1
## Solyc05g015270.1.1 Solyc05g015550.1.1 Solyc05g017760.2.1
## 1 1 1
## Solyc05g017890.2.1 Solyc05g018340.2.1 Solyc05g021100.2.1
## 1 1 1
## Solyc05g023850.1.1 Solyc05g050120.2.1 Solyc05g050740.2.1
## 1 1 1
## Solyc05g051530.2.1 Solyc05g051900.2.1 Solyc05g052400.2.1
## 1 1 1
## Solyc05g053120.1.1 Solyc05g053550.2.1 Solyc05g053740.2.1
## 1 1 1
## Solyc05g053940.2.1 Solyc05g054310.2.1 Solyc05g054370.2.1
## 1 1 1
## Solyc05g055470.2.1 Solyc05g056430.1.1 Solyc06g007980.2.1
## 1 1 1
## Solyc06g008340.2.1 Solyc06g008750.1.1 Solyc06g008960.2.1
## 1 1 1
## Solyc06g009270.2.1 Solyc06g009540.1.1 Solyc06g011500.1.1
## 1 1 1
## Solyc06g018070.1.1 Solyc06g034200.1.1 Solyc06g035530.2.1
## 1 1 1
## Solyc06g036810.1.1 Solyc06g048890.2.1 Solyc06g048910.1.1
## 1 1 1
## Solyc06g050160.2.1 Solyc06g051850.1.1 Solyc06g053160.2.1
## 1 1 1
## Solyc06g053740.2.1 Solyc06g054480.2.1 Solyc06g060920.2.1
## 1 1 1
## Solyc06g061280.2.1 Solyc06g062390.2.1 Solyc06g062830.2.1
## 1 1 1
## Solyc06g062860.2.1 Solyc06g062970.1.1 Solyc06g063010.2.1
## 1 1 1
## Solyc06g063150.2.1 Solyc06g065910.2.1 Solyc06g066000.1.1
## 1 1 1
## Solyc06g066390.1.1 Solyc06g067920.2.1 Solyc06g068080.2.1
## 1 1 1
## Solyc06g068830.1.1 Solyc06g068980.2.1 Solyc06g069550.1.1
## 1 1 1
## Solyc06g069810.1.1 Solyc06g069870.2.1 Solyc06g071570.2.1
## 1 1 1
## Solyc06g071650.1.1 Solyc06g071920.2.1 Solyc06g071990.2.1
## 1 1 1
## Solyc06g072810.2.1 Solyc06g072880.1.1 Solyc06g073950.2.1
## 1 1 1
## Solyc06g074390.2.1 Solyc06g074670.2.1 Solyc06g074850.2.1
## 1 1 1
## Solyc06g074890.1.1 Solyc06g075400.2.1 Solyc06g075480.2.1
## 1 1 1
## Solyc06g075570.1.1 Solyc06g075710.1.1 Solyc06g075720.1.1
## 1 1 1
## Solyc06g076980.2.1 Solyc06g083140.2.1 Solyc06g083760.2.1
## 1 1 1
## Solyc06g083830.2.1 Solyc07g005560.2.1 Solyc07g005730.2.1
## 1 1 1
## Solyc07g005780.1.1 Solyc07g007730.2.1 Solyc07g008300.1.1
## 1 1 1
## Solyc07g008880.2.1 Solyc07g014660.1.1 Solyc07g016210.1.1
## 1 1 1
## Solyc07g025270.1.1 Solyc07g045300.2.1 Solyc07g045430.2.1
## 1 1 1
## Solyc07g048070.2.1 Solyc07g049700.1.1 Solyc07g052760.1.1
## 1 1 1
## Solyc07g052870.1.1 Solyc07g053570.2.1 Solyc07g053870.2.1
## 1 1 1
## Solyc07g054320.2.1 Solyc07g055730.2.1 Solyc07g056100.1.1
## 1 1 1
## Solyc07g062010.1.1 Solyc07g062360.1.1 Solyc07g062430.2.1
## 1 1 1
## Solyc07g062580.2.1 Solyc07g063580.2.1 Solyc07g063820.2.1
## 1 1 1
## Solyc07g063940.1.1 Solyc07g064030.2.1 Solyc07g064340.2.1
## 1 1 1
## Solyc07g064400.1.1 Solyc07g064420.2.1 Solyc07g064520.2.1
## 1 1 1
## Solyc07g065760.1.1 Solyc07g066500.1.1 Solyc08g005550.2.1
## 1 1 1
## Solyc08g006450.1.1 Solyc08g006910.2.1 Solyc08g007270.2.1
## 1 1 1
## Solyc08g007530.2.1 Solyc08g007680.1.1 Solyc08g008410.2.1
## 1 1 1
## Solyc08g008480.2.1 Solyc08g014150.2.1 Solyc08g014190.2.1
## 1 1 1
## Solyc08g014550.2.1 Solyc08g015990.2.1 Solyc08g016470.1.1
## 1 1 1
## Solyc08g022130.1.1 Solyc08g048170.1.1 Solyc08g061430.1.1
## 1 1 1
## Solyc08g061610.2.1 Solyc08g061650.2.1 Solyc08g061930.2.1
## 1 1 1
## Solyc08g065490.2.1 Solyc08g065780.1.1 Solyc08g065890.2.1
## 1 1 1
## Solyc08g066580.2.1 Solyc08g066990.2.1 Solyc08g068380.2.1
## 1 1 1
## Solyc08g075710.2.1 Solyc08g075830.2.1 Solyc08g076140.2.1
## 1 1 1
## Solyc08g076790.2.1 Solyc08g076970.2.1 Solyc08g076990.2.1
## 1 1 1
## Solyc08g077690.2.1 Solyc08g077820.2.1 Solyc08g078290.1.1
## 1 1 1
## Solyc08g078310.2.1 Solyc08g078590.1.1 Solyc08g080170.2.1
## 1 1 1
## Solyc08g080510.2.1 Solyc08g081360.2.1 Solyc08g082900.2.1
## 1 1 1
## Solyc08g083040.2.1 Solyc08g083370.2.1 Solyc09g005150.1.1
## 1 1 1
## Solyc09g005830.1.1 Solyc09g007590.1.1 Solyc09g007630.2.1
## 1 1 1
## Solyc09g008440.1.1 Solyc09g008740.1.1 Solyc09g008770.2.1
## 1 1 1
## Solyc09g008960.1.1 Solyc09g009200.1.1 Solyc09g009540.2.1
## 1 1 1
## Solyc09g009600.1.1 Solyc09g009690.2.1 Solyc09g010080.2.1
## 1 1 1
## Solyc09g010450.1.1 Solyc09g011060.2.1 Solyc09g011580.2.1
## 1 1 1
## Solyc09g014590.2.1 Solyc09g015120.2.1 Solyc09g015850.2.1
## 1 1 1
## Solyc09g018730.2.1 Solyc09g018960.2.1 Solyc09g020130.2.1
## 1 1 1
## Solyc09g025220.1.1 Solyc09g025280.1.1 Solyc09g055600.1.1
## 1 1 1
## Solyc09g061430.2.1 Solyc09g064290.1.1 Solyc09g064330.1.1
## 1 1 1
## Solyc09g065410.2.1 Solyc09g066090.2.1 Solyc09g072690.1.1
## 1 1 1
## Solyc09g072900.2.1 Solyc09g074350.1.1 Solyc09g074670.2.1
## 1 1 1
## Solyc09g075770.1.1 Solyc09g075830.2.1 Solyc09g082140.2.1
## 1 1 1
## Solyc09g082760.2.1 Solyc09g083000.2.1 Solyc09g089520.2.1
## 1 1 1
## Solyc09g089770.2.1 Solyc09g090130.2.1 Solyc09g090500.2.1
## 1 1 1
## Solyc09g090580.2.1 Solyc09g091090.1.1 Solyc09g091660.2.1
## 1 1 1
## Solyc09g098210.1.1 Solyc10g005400.2.1 Solyc10g005440.1.1
## 1 1 1
## Solyc10g005840.2.1 Solyc10g005920.2.1 Solyc10g006100.2.1
## 1 1 1
## Solyc10g006110.2.1 Solyc10g006660.2.1 Solyc10g007350.2.1
## 1 1 1
## Solyc10g007440.2.1 Solyc10g007630.1.1 Solyc10g008260.1.1
## 1 1 1
## Solyc10g008410.1.1 Solyc10g008640.2.1 Solyc10g008910.1.1
## 1 1 1
## Solyc10g008980.2.1 Solyc10g011760.2.1 Solyc10g017650.1.1
## 1 1 1
## Solyc10g017850.2.1 Solyc10g018790.1.1 Solyc10g038130.1.1
## 1 1 1
## Solyc10g045180.1.1 Solyc10g045260.1.1 Solyc10g047110.1.1
## 1 1 1
## Solyc10g047820.1.1 Solyc10g050570.1.1 Solyc10g050690.1.1
## 1 1 1
## Solyc10g053900.1.1 Solyc10g054010.1.1 Solyc10g054030.1.1
## 1 1 1
## Solyc10g055450.1.1 Solyc10g061920.1.1 Solyc10g062180.1.1
## 1 1 1
## Solyc10g075040.1.1 Solyc10g076660.1.1 Solyc10g076690.1.1
## 1 1 1
## Solyc10g078260.1.1 Solyc10g078390.1.1 Solyc10g078990.1.1
## 1 1 1
## Solyc10g079190.1.1 Solyc10g079240.1.1 Solyc10g079370.1.1
## 1 1 1
## Solyc10g079680.1.1 Solyc10g080870.2.1 Solyc10g081030.1.1
## 1 1 1
## Solyc10g081200.1.1 Solyc10g082020.1.1 Solyc10g083440.1.1
## 1 1 1
## Solyc10g084080.1.1 Solyc10g085220.1.1 Solyc10g085410.1.1
## 1 1 1
## Solyc10g085710.1.1 Solyc10g085790.1.1 Solyc10g086020.1.1
## 1 1 1
## Solyc10g086380.1.1 Solyc10g086640.1.1 Solyc11g005330.1.1
## 1 1 1
## Solyc11g006180.1.1 Solyc11g007040.1.1 Solyc11g007370.1.1
## 1 1 1
## Solyc11g007480.1.1 Solyc11g007960.1.1 Solyc11g008140.1.1
## 1 1 1
## Solyc11g008230.1.1 Solyc11g008520.1.1 Solyc11g010540.1.1
## 1 1 1
## Solyc11g011090.1.1 Solyc11g012510.1.1 Solyc11g012540.1.1
## 1 1 1
## Solyc11g012690.1.1 Solyc11g013530.1.1 Solyc11g019990.1.1
## 1 1 1
## Solyc11g020620.1.1 Solyc11g021020.1.1 Solyc11g021340.1.1
## 1 1 1
## Solyc11g027660.1.1 Solyc11g044860.1.1 Solyc11g044880.1.1
## 1 1 1
## Solyc11g050840.1.1 Solyc11g056360.1.1 Solyc11g062070.1.1
## 1 1 1
## Solyc11g065140.1.1 Solyc11g065910.1.1 Solyc11g066240.1.1
## 1 1 1
## Solyc11g066560.1.1 Solyc11g069950.1.1 Solyc11g070120.1.1
## 1 1 1
## Solyc11g072650.1.1 Solyc11g072910.1.1 Solyc11g073090.1.1
## 1 1 1
## Solyc12g005160.1.1 Solyc12g005170.1.1 Solyc12g005290.1.1
## 1 1 1
## Solyc12g005470.1.1 Solyc12g005860.1.1 Solyc12g005870.1.1
## 1 1 1
## Solyc12g006060.1.1 Solyc12g006370.1.1 Solyc12g006380.1.1
## 1 1 1
## Solyc12g006680.1.1 Solyc12g006950.1.1 Solyc12g008840.1.1
## 1 1 1
## Solyc12g008890.1.1 Solyc12g009400.1.1 Solyc12g009610.1.1
## 1 1 1
## Solyc12g010520.1.1 Solyc12g011390.1.1 Solyc12g013710.1.1
## 1 1 1
## Solyc12g014150.1.1 Solyc12g017900.1.1 Solyc12g019310.1.1
## 1 1 1
## Solyc12g038390.1.1 Solyc12g038820.1.1 Solyc12g042070.1.1
## 1 1 1
## Solyc12g042750.1.1 Solyc12g042960.1.1 Solyc12g044640.1.1
## 1 1 1
## Solyc12g055820.1.1 Solyc12g056380.1.1 Solyc12g056430.1.1
## 1 1 1
## Solyc12g077350.1.1 Solyc12g087830.1.1 Solyc12g089210.1.1
## 1 1 1
## Solyc12g089250.1.1 Solyc12g094470.1.1 Solyc12g095840.1.1
## 1 1 1
## Solyc12g095860.1.1 Solyc12g096140.1.1 Solyc12g096300.1.1
## 1 1 1
## Solyc12g096830.1.1 Solyc12g096860.1.1 Solyc12g098210.1.1
## 1 1 1
## Solyc12g098580.1.1 Solyc12g098680.1.1 Solyc12g100120.1.1
## 1 1 1
## Solyc12g100270.1.1 Solyc01g005850.1.1 Solyc01g006620.2.1
## 1 2 2
## Solyc01g007020.2.1 Solyc01g007640.2.1 Solyc01g008060.2.1
## 2 2 2
## Solyc01g008710.2.1 Solyc01g009050.2.1 Solyc01g009770.2.1
## 2 2 2
## Solyc01g016690.1.1 Solyc01g057890.1.1 Solyc01g057960.1.1
## 2 2 2
## Solyc01g059880.2.1 Solyc01g066970.2.1 Solyc01g067100.2.1
## 2 2 2
## Solyc01g068430.1.1 Solyc01g079580.2.1 Solyc01g080930.2.1
## 2 2 2
## Solyc01g081010.2.1 Solyc01g081180.1.1 Solyc01g087150.2.1
## 2 2 2
## Solyc01g090730.2.1 Solyc01g094030.2.1 Solyc01g094370.2.1
## 2 2 2
## Solyc01g096940.2.1 Solyc01g098530.2.1 Solyc01g098560.2.1
## 2 2 2
## Solyc01g099010.2.1 Solyc01g100610.2.1 Solyc01g103630.2.1
## 2 2 2
## Solyc01g103830.1.1 Solyc01g105350.1.1 Solyc01g106250.2.1
## 2 2 2
## Solyc01g106790.2.1 Solyc01g107100.2.1 Solyc01g107510.2.1
## 2 2 2
## Solyc01g107650.2.1 Solyc01g108110.2.1 Solyc01g108560.2.1
## 2 2 2
## Solyc01g109150.2.1 Solyc01g109940.2.1 Solyc01g110200.1.1
## 2 2 2
## Solyc01g110750.2.1 Solyc01g111310.2.1 Solyc02g005350.2.1
## 2 2 2
## Solyc02g021580.1.1 Solyc02g031950.2.1 Solyc02g032210.1.1
## 2 2 2
## Solyc02g062570.2.1 Solyc02g063260.2.1 Solyc02g065150.1.1
## 2 2 2
## Solyc02g065300.1.1 Solyc02g071820.2.1 Solyc02g071870.2.1
## 2 2 2
## Solyc02g072280.1.1 Solyc02g077270.2.1 Solyc02g080440.2.1
## 2 2 2
## Solyc02g083040.1.1 Solyc02g083150.2.1 Solyc02g084240.2.1
## 2 2 2
## Solyc02g084390.2.1 Solyc02g085870.2.1 Solyc02g086230.1.1
## 2 2 2
## Solyc02g086460.2.1 Solyc02g086940.2.1 Solyc02g087450.2.1
## 2 2 2
## Solyc02g088770.2.1 Solyc02g089160.2.1 Solyc02g089670.2.1
## 2 2 2
## Solyc02g091240.1.1 Solyc02g093040.2.1 Solyc03g005620.2.1
## 2 2 2
## Solyc03g005680.2.1 Solyc03g005720.2.1 Solyc03g005750.2.1
## 2 2 2
## Solyc03g006260.2.1 Solyc03g006620.2.1 Solyc03g019900.2.1
## 2 2 2
## Solyc03g025140.1.1 Solyc03g025450.2.1 Solyc03g032010.2.1
## 2 2 2
## Solyc03g033540.2.1 Solyc03g033950.2.1 Solyc03g063680.1.1
## 2 2 2
## Solyc03g071760.1.1 Solyc03g078060.2.1 Solyc03g080000.1.1
## 2 2 2
## Solyc03g082760.1.1 Solyc03g093270.2.1 Solyc03g093870.1.1
## 2 2 2
## Solyc03g093930.2.1 Solyc03g094040.2.1 Solyc03g095270.1.1
## 2 2 2
## Solyc03g095620.2.1 Solyc03g096000.2.1 Solyc03g096530.1.1
## 2 2 2
## Solyc03g111350.2.1 Solyc03g111450.1.1 Solyc03g114000.2.1
## 2 2 2
## Solyc03g114280.2.1 Solyc03g119420.2.1 Solyc03g121360.1.1
## 2 2 2
## Solyc03g122140.2.1 Solyc03g123600.2.1 Solyc04g005560.2.1
## 2 2 2
## Solyc04g007360.1.1 Solyc04g008720.2.1 Solyc04g011570.2.1
## 2 2 2
## Solyc04g012060.2.1 Solyc04g016160.2.1 Solyc04g016490.2.1
## 2 2 2
## Solyc04g025530.2.1 Solyc04g025900.1.1 Solyc04g050770.1.1
## 2 2 2
## Solyc04g052980.1.1 Solyc04g072450.2.1 Solyc04g072520.1.1
## 2 2 2
## Solyc04g076660.2.1 Solyc04g079180.2.1 Solyc04g079830.2.1
## 2 2 2
## Solyc04g080360.2.1 Solyc04g081690.1.1 Solyc04g081910.2.1
## 2 2 2
## Solyc04g082040.2.1 Solyc05g005110.1.1 Solyc05g005190.2.1
## 2 2 2
## Solyc05g005340.2.1 Solyc05g005390.1.1 Solyc05g006590.2.1
## 2 2 2
## Solyc05g007050.2.1 Solyc05g007640.2.1 Solyc05g009660.2.1
## 2 2 2
## Solyc05g014120.1.1 Solyc05g014150.2.1 Solyc05g014160.2.1
## 2 2 2
## Solyc05g025510.2.1 Solyc05g041200.2.1 Solyc05g043360.1.1
## 2 2 2
## Solyc05g050230.2.1 Solyc05g050350.1.1 Solyc05g050670.1.1
## 2 2 2
## Solyc05g051660.1.1 Solyc05g052340.2.1 Solyc05g052740.1.1
## 2 2 2
## Solyc05g052830.2.1 Solyc05g053830.2.1 Solyc05g053860.2.1
## 2 2 2
## Solyc05g053910.1.1 Solyc05g054320.2.1 Solyc05g055070.2.1
## 2 2 2
## Solyc05g055600.2.1 Solyc06g005330.2.1 Solyc06g007340.2.1
## 2 2 2
## Solyc06g007880.1.1 Solyc06g009040.2.1 Solyc06g033870.1.1
## 2 2 2
## Solyc06g034130.2.1 Solyc06g035470.1.1 Solyc06g048860.1.1
## 2 2 2
## Solyc06g052010.1.1 Solyc06g053420.2.1 Solyc06g053830.2.1
## 2 2 2
## Solyc06g054070.2.1 Solyc06g060100.2.1 Solyc06g062840.2.1
## 2 2 2
## Solyc06g064710.1.1 Solyc06g065030.2.1 Solyc06g065380.2.1
## 2 2 2
## Solyc06g065660.1.1 Solyc06g065670.2.1 Solyc06g066820.2.1
## 2 2 2
## Solyc06g068990.2.1 Solyc06g071320.2.1 Solyc06g071410.2.1
## 2 2 2
## Solyc06g071700.1.1 Solyc06g072300.2.1 Solyc06g073860.1.1
## 2 2 2
## Solyc06g074410.2.1 Solyc06g074790.1.1 Solyc06g075260.2.1
## 2 2 2
## Solyc06g075500.2.1 Solyc06g082270.1.1 Solyc06g084380.2.1
## 2 2 2
## Solyc07g005770.2.1 Solyc07g006740.2.1 Solyc07g007500.2.1
## 2 2 2
## Solyc07g008750.2.1 Solyc07g014580.2.1 Solyc07g042680.2.1
## 2 2 2
## Solyc07g047850.2.1 Solyc07g049580.2.1 Solyc07g052020.1.1
## 2 2 2
## Solyc07g052430.2.1 Solyc07g052700.2.1 Solyc07g053450.2.1
## 2 2 2
## Solyc07g054790.1.1 Solyc07g054820.2.1 Solyc07g056580.2.1
## 2 2 2
## Solyc07g063130.2.1 Solyc07g063920.2.1 Solyc07g064810.2.1
## 2 2 2
## Solyc08g005410.2.1 Solyc08g006220.2.1 Solyc08g006920.1.1
## 2 2 2
## Solyc08g007200.2.1 Solyc08g008030.2.1 Solyc08g014090.1.1
## 2 2 2
## Solyc08g014610.2.1 Solyc08g048390.1.1 Solyc08g061570.1.1
## 2 2 2
## Solyc08g062450.1.1 Solyc08g062600.1.1 Solyc08g065380.2.1
## 2 2 2
## Solyc08g069180.2.1 Solyc08g074550.2.1 Solyc08g075360.1.1
## 2 2 2
## Solyc08g076980.2.1 Solyc08g077530.2.1 Solyc08g077560.2.1
## 2 2 2
## Solyc08g077960.2.1 Solyc08g078430.2.1 Solyc08g079260.2.1
## 2 2 2
## Solyc08g082430.2.1 Solyc09g007310.2.1 Solyc09g009280.1.1
## 2 2 2
## Solyc09g009800.2.1 Solyc09g010090.2.1 Solyc09g010680.2.1
## 2 2 2
## Solyc09g010990.2.1 Solyc09g011090.1.1 Solyc09g014710.2.1
## 2 2 2
## Solyc09g020080.1.1 Solyc09g031600.2.1 Solyc09g031760.1.1
## 2 2 2
## Solyc09g059030.2.1 Solyc09g061350.1.1 Solyc09g063030.2.1
## 2 2 2
## Solyc09g065930.2.1 Solyc09g074620.2.1 Solyc09g074680.2.1
## 2 2 2
## Solyc09g074780.2.1 Solyc09g075450.2.1 Solyc09g082370.2.1
## 2 2 2
## Solyc09g082860.2.1 Solyc09g083020.1.1 Solyc09g083310.1.1
## 2 2 2
## Solyc09g089580.2.1 Solyc09g090390.1.1 Solyc09g092440.1.1
## 2 2 2
## Solyc09g098280.2.1 Solyc10g005330.2.1 Solyc10g005460.2.1
## 2 2 2
## Solyc10g007040.2.1 Solyc10g008250.1.1 Solyc10g008440.2.1
## 2 2 2
## Solyc10g009050.2.1 Solyc10g009630.1.1 Solyc10g018120.1.1
## 2 2 2
## Solyc10g047480.1.1 Solyc10g049950.1.1 Solyc10g050620.1.1
## 2 2 2
## Solyc10g051340.1.1 Solyc10g054590.1.1 Solyc10g054900.1.1
## 2 2 2
## Solyc10g062340.1.1 Solyc10g074900.1.1 Solyc10g076650.1.1
## 2 2 2
## Solyc10g076780.1.1 Solyc10g077000.1.1 Solyc10g077080.1.1
## 2 2 2
## Solyc10g079060.1.1 Solyc10g083870.1.1 Solyc10g083970.1.1
## 2 2 2
## Solyc10g084150.1.1 Solyc10g084660.1.1 Solyc10g084690.1.1
## 2 2 2
## Solyc10g084770.1.1 Solyc10g084860.1.1 Solyc10g085050.1.1
## 2 2 2
## Solyc10g086420.1.1 Solyc11g005150.1.1 Solyc11g006230.1.1
## 2 2 2
## Solyc11g007380.1.1 Solyc11g010400.1.1 Solyc11g010620.1.1
## 2 2 2
## Solyc11g010830.1.1 Solyc11g011670.1.1 Solyc11g011880.1.1
## 2 2 2
## Solyc11g012200.1.1 Solyc11g017270.1.1 Solyc11g017300.1.1
## 2 2 2
## Solyc11g017400.1.1 Solyc11g021130.1.1 Solyc11g039450.1.1
## 2 2 2
## Solyc11g045370.1.1 Solyc11g065660.1.1 Solyc11g066640.1.1
## 2 2 2
## Solyc11g066820.1.1 Solyc11g067280.1.1 Solyc11g068670.1.1
## 2 2 2
## Solyc11g070140.1.1 Solyc11g071920.1.1 Solyc11g072120.1.1
## 2 2 2
## Solyc11g072890.1.1 Solyc12g006690.1.1 Solyc12g009490.1.1
## 2 2 2
## Solyc12g010490.1.1 Solyc12g011000.1.1 Solyc12g011140.1.1
## 2 2 2
## Solyc12g014250.1.1 Solyc12g014280.1.1 Solyc12g014310.1.1
## 2 2 2
## Solyc12g014470.1.1 Solyc12g014560.1.1 Solyc12g019140.1.1
## 2 2 2
## Solyc12g019880.1.1 Solyc12g042700.1.1 Solyc12g044440.1.1
## 2 2 2
## Solyc12g056080.1.1 Solyc12g056200.1.1 Solyc12g056420.1.1
## 2 2 2
## Solyc12g057110.2.1 Solyc12g088390.1.1 Solyc12g088540.1.1
## 2 2 2
## Solyc12g088750.1.1 Solyc12g094560.1.1 Solyc12g098330.1.1
## 2 2 2
## Solyc12g099980.1.1 Solyc12g099990.1.1 Solyc12g100200.1.1
## 2 2 2
## Solyc01g007190.2.1 Solyc01g007500.2.1 Solyc01g007600.2.1
## 3 3 3
## Solyc01g007730.2.1 Solyc01g008650.2.1 Solyc01g009450.2.1
## 3 3 3
## Solyc01g056960.1.1 Solyc01g057300.1.1 Solyc01g058130.1.1
## 3 3 3
## Solyc01g058430.1.1 Solyc01g068020.2.1 Solyc01g068320.1.1
## 3 3 3
## Solyc01g079940.2.1 Solyc01g080790.2.1 Solyc01g087480.1.1
## 3 3 3
## Solyc01g088690.2.1 Solyc01g091170.2.1 Solyc01g097550.2.1
## 3 3 3
## Solyc01g099660.2.1 Solyc01g104820.2.1 Solyc01g106050.2.1
## 3 3 3
## Solyc01g106700.2.1 Solyc01g107220.2.1 Solyc01g107880.2.1
## 3 3 3
## Solyc01g109270.2.1 Solyc01g109310.2.1 Solyc01g109450.2.1
## 3 3 3
## Solyc01g109540.2.1 Solyc01g109800.2.1 Solyc02g014540.1.1
## 3 3 3
## Solyc02g030250.2.1 Solyc02g036260.2.1 Solyc02g061980.2.1
## 3 3 3
## Solyc02g062340.2.1 Solyc02g062890.1.1 Solyc02g063050.2.1
## 3 3 3
## Solyc02g065240.2.1 Solyc02g068930.2.1 Solyc02g069200.1.1
## 3 3 3
## Solyc02g071320.2.1 Solyc02g072420.1.1 Solyc02g077160.2.1
## 3 3 3
## Solyc02g079310.1.1 Solyc02g082080.1.1 Solyc02g083470.2.1
## 3 3 3
## Solyc02g083520.2.1 Solyc02g085750.2.1 Solyc02g085980.1.1
## 3 3 3
## Solyc02g089700.2.1 Solyc02g090990.1.1 Solyc02g091520.2.1
## 3 3 3
## Solyc02g091630.1.1 Solyc03g005170.2.1 Solyc03g006670.2.1
## 3 3 3
## Solyc03g007320.2.1 Solyc03g008010.2.1 Solyc03g020040.2.1
## 3 3 3
## Solyc03g025520.2.1 Solyc03g031620.2.1 Solyc03g031780.2.1
## 3 3 3
## Solyc03g033710.2.1 Solyc03g034180.2.1 Solyc03g081200.1.1
## 3 3 3
## Solyc03g096990.2.1 Solyc03g097080.2.1 Solyc03g097500.2.1
## 3 3 3
## Solyc03g112960.1.1 Solyc03g114890.2.1 Solyc03g115410.2.1
## 3 3 3
## Solyc03g117850.2.1 Solyc03g118410.2.1 Solyc03g118970.2.1
## 3 3 3
## Solyc03g119680.1.1 Solyc03g121540.2.1 Solyc04g005690.2.1
## 3 3 3
## Solyc04g008640.2.1 Solyc04g015600.2.1 Solyc04g015610.2.1
## 3 3 3
## Solyc04g015980.2.1 Solyc04g016010.2.1 Solyc04g016480.2.1
## 3 3 3
## Solyc04g025410.1.1 Solyc04g028430.1.1 Solyc04g047850.1.1
## 3 3 3
## Solyc04g072940.2.1 Solyc04g074170.1.1 Solyc04g079250.2.1
## 3 3 3
## Solyc04g079980.2.1 Solyc05g005140.2.1 Solyc05g005930.1.1
## 3 3 3
## Solyc05g008220.2.1 Solyc05g009590.2.1 Solyc05g018410.1.1
## 3 3 3
## Solyc05g025890.1.1 Solyc05g043240.1.1 Solyc05g043390.1.1
## 3 3 3
## Solyc05g049870.2.1 Solyc05g050830.1.1 Solyc05g051380.2.1
## 3 3 3
## Solyc05g052100.2.1 Solyc05g053330.2.1 Solyc05g053540.2.1
## 3 3 3
## Solyc05g054720.2.1 Solyc05g055410.1.1 Solyc05g055690.1.1
## 3 3 3
## Solyc05g056200.1.1 Solyc05g056480.2.1 Solyc05g056620.1.1
## 3 3 3
## Solyc06g009650.2.1 Solyc06g009750.2.1 Solyc06g034180.1.1
## 3 3 3
## Solyc06g036470.1.1 Solyc06g043050.1.1 Solyc06g053520.2.1
## 3 3 3
## Solyc06g060330.1.1 Solyc06g060690.2.1 Solyc06g065010.2.1
## 3 3 3
## Solyc06g066370.2.1 Solyc06g066760.2.1 Solyc06g073730.1.1
## 3 3 3
## Solyc06g075050.1.1 Solyc06g075580.2.1 Solyc06g075900.1.1
## 3 3 3
## Solyc06g083020.1.1 Solyc06g083470.2.1 Solyc06g083600.1.1
## 3 3 3
## Solyc06g084160.2.1 Solyc07g007150.1.1 Solyc07g009060.2.1
## 3 3 3
## Solyc07g009250.1.1 Solyc07g017980.1.1 Solyc07g041030.1.1
## 3 3 3
## Solyc07g043050.1.1 Solyc07g047690.1.1 Solyc07g047870.1.1
## 3 3 3
## Solyc07g049530.2.1 Solyc07g053910.2.1 Solyc07g054480.1.1
## 3 3 3
## Solyc07g055190.2.1 Solyc07g055750.2.1 Solyc07g056660.2.1
## 3 3 3
## Solyc07g065520.2.1 Solyc08g005370.1.1 Solyc08g006240.1.1
## 3 3 3
## Solyc08g006330.2.1 Solyc08g007860.2.1 Solyc08g013700.1.1
## 3 3 3
## Solyc08g022070.2.1 Solyc08g066770.2.1 Solyc08g066790.2.1
## 3 3 3
## Solyc08g066800.2.1 Solyc08g068830.2.1 Solyc08g074860.1.1
## 3 3 3
## Solyc08g075460.2.1 Solyc08g076320.2.1 Solyc08g076370.2.1
## 3 3 3
## Solyc08g076900.2.1 Solyc08g077080.1.1 Solyc08g078270.2.1
## 3 3 3
## Solyc08g078850.2.1 Solyc08g080840.1.1 Solyc08g081630.1.1
## 3 3 3
## Solyc09g005840.1.1 Solyc09g007550.2.1 Solyc09g007750.2.1
## 3 3 3
## Solyc09g009310.1.1 Solyc09g011320.2.1 Solyc09g011520.2.1
## 3 3 3
## Solyc09g011550.2.1 Solyc09g011560.2.1 Solyc09g011790.2.1
## 3 3 3
## Solyc09g011800.2.1 Solyc09g012020.1.1 Solyc09g014300.2.1
## 3 3 3
## Solyc09g015240.1.1 Solyc09g055690.1.1 Solyc09g075060.2.1
## 3 3 3
## Solyc09g075430.2.1 Solyc09g083300.1.1 Solyc09g089830.2.1
## 3 3 3
## Solyc09g090210.2.1 Solyc10g007200.2.1 Solyc10g007220.1.1
## 3 3 3
## Solyc10g008860.1.1 Solyc10g012060.2.1 Solyc10g017810.1.1
## 3 3 3
## Solyc10g018530.1.1 Solyc10g045230.1.1 Solyc10g047950.1.1
## 3 3 3
## Solyc10g061830.1.1 Solyc10g075100.1.1 Solyc10g076790.1.1
## 3 3 3
## Solyc10g079320.1.1 Solyc10g080050.1.1 Solyc10g080100.1.1
## 3 3 3
## Solyc10g081130.1.1 Solyc10g083530.1.1 Solyc10g084390.1.1
## 3 3 3
## Solyc10g085570.1.1 Solyc10g086780.1.1 Solyc11g005310.1.1
## 3 3 3
## Solyc11g008580.1.1 Solyc11g011750.1.1 Solyc11g012560.1.1
## 3 3 3
## Solyc11g018550.2.1 Solyc11g020280.1.1 Solyc11g020320.1.1
## 3 3 3
## Solyc11g020810.1.1 Solyc11g056540.1.1 Solyc11g062270.1.1
## 3 3 3
## Solyc11g067300.1.1 Solyc11g068420.1.1 Solyc11g072390.1.1
## 3 3 3
## Solyc12g005250.1.1 Solyc12g006570.1.1 Solyc12g006960.1.1
## 3 3 3
## Solyc12g008500.1.1 Solyc12g009820.1.1 Solyc12g010350.1.1
## 3 3 3
## Solyc12g010390.1.1 Solyc12g013950.1.1 Solyc12g014490.1.1
## 3 3 3
## Solyc12g016220.1.1 Solyc12g019830.1.1 Solyc12g035840.1.1
## 3 3 3
## Solyc12g040680.1.1 Solyc12g049030.1.1 Solyc12g056410.1.1
## 3 3 3
## Solyc12g062160.1.1 Solyc12g062200.1.1 Solyc12g087920.1.1
## 3 3 3
## Solyc12g094460.1.1 Solyc01g005000.2.1 Solyc01g005270.2.1
## 3 4 4
## Solyc01g007910.2.1 Solyc01g009400.2.1 Solyc01g014490.2.1
## 4 4 4
## Solyc01g058000.2.1 Solyc01g080160.2.1 Solyc01g080390.1.1
## 4 4 4
## Solyc01g087260.2.1 Solyc01g087910.2.1 Solyc01g088410.2.1
## 4 4 4
## Solyc01g090650.1.1 Solyc01g098030.2.1 Solyc01g100650.2.1
## 4 4 4
## Solyc01g105610.1.1 Solyc01g105870.2.1 Solyc01g106350.2.1
## 4 4 4
## Solyc02g021260.1.1 Solyc02g030630.1.1 Solyc02g032650.2.1
## 4 4 4
## Solyc02g062710.1.1 Solyc02g063190.2.1 Solyc02g070290.2.1
## 4 4 4
## Solyc02g070600.1.1 Solyc02g076990.2.1 Solyc02g078990.2.1
## 4 4 4
## Solyc02g082300.2.1 Solyc02g082950.2.1 Solyc02g085130.2.1
## 4 4 4
## Solyc02g085640.2.1 Solyc02g087180.2.1 Solyc02g087220.2.1
## 4 4 4
## Solyc02g088970.1.1 Solyc02g089170.2.1 Solyc02g090030.2.1
## 4 4 4
## Solyc02g090050.2.1 Solyc02g092490.2.1 Solyc02g093800.2.1
## 4 4 4
## Solyc02g093860.2.1 Solyc03g025760.2.1 Solyc03g026290.2.1
## 4 4 4
## Solyc03g034120.2.1 Solyc03g081250.1.1 Solyc03g115370.2.1
## 4 4 4
## Solyc03g115470.2.1 Solyc03g118250.2.1 Solyc03g118360.2.1
## 4 4 4
## Solyc03g118850.2.1 Solyc03g120390.2.1 Solyc04g007260.2.1
## 4 4 4
## Solyc04g008590.2.1 Solyc04g015390.2.1 Solyc04g039620.2.1
## 4 4 4
## Solyc04g050390.1.1 Solyc04g050720.2.1 Solyc04g053020.1.1
## 4 4 4
## Solyc04g054440.1.1 Solyc04g058180.2.1 Solyc04g071600.2.1
## 4 4 4
## Solyc04g076880.2.1 Solyc04g077350.1.1 Solyc04g077370.1.1
## 4 4 4
## Solyc04g077390.2.1 Solyc05g006860.2.1 Solyc05g008510.2.1
## 4 4 4
## Solyc05g009310.2.1 Solyc05g010320.2.1 Solyc05g015050.2.1
## 4 4 4
## Solyc05g026260.1.1 Solyc05g041490.1.1 Solyc05g044540.1.1
## 4 4 4
## Solyc05g046060.1.1 Solyc05g047680.2.1 Solyc05g050380.2.1
## 4 4 4
## Solyc05g052510.2.1 Solyc05g052910.2.1 Solyc05g053260.2.1
## 4 4 4
## Solyc05g053300.2.1 Solyc05g053650.2.1 Solyc05g053820.2.1
## 4 4 4
## Solyc05g055680.2.1 Solyc06g005310.2.1 Solyc06g005660.1.1
## 4 4 4
## Solyc06g009210.2.1 Solyc06g024360.1.1 Solyc06g036090.1.1
## 4 4 4
## Solyc06g050270.1.1 Solyc06g051860.1.1 Solyc06g060180.1.1
## 4 4 4
## Solyc06g060270.2.1 Solyc06g060990.2.1 Solyc06g063180.1.1
## 4 4 4
## Solyc06g063210.2.1 Solyc06g065450.2.1 Solyc06g071850.2.1
## 4 4 4
## Solyc06g072610.2.1 Solyc06g074220.2.1 Solyc06g074650.2.1
## 4 4 4
## Solyc06g075450.1.1 Solyc06g075520.2.1 Solyc06g083030.2.1
## 4 4 4
## Solyc06g083280.1.1 Solyc06g083520.2.1 Solyc07g005070.1.1
## 4 4 4
## Solyc07g006870.2.1 Solyc07g008610.1.1 Solyc07g043480.1.1
## 4 4 4
## Solyc07g047760.1.1 Solyc07g053790.1.1 Solyc07g055490.2.1
## 4 4 4
## Solyc07g055640.1.1 Solyc07g062400.2.1 Solyc07g064190.1.1
## 4 4 4
## Solyc08g006390.1.1 Solyc08g007920.1.1 Solyc08g008010.2.1
## 4 4 4
## Solyc08g062720.1.1 Solyc08g067570.1.1 Solyc08g067790.2.1
## 4 4 4
## Solyc08g078390.2.1 Solyc08g079230.1.1 Solyc08g080390.2.1
## 4 4 4
## Solyc08g080930.1.1 Solyc08g081540.2.1 Solyc08g083390.1.1
## 4 4 4
## Solyc09g005670.1.1 Solyc09g007010.1.1 Solyc09g011490.2.1
## 4 4 4
## Solyc09g011600.2.1 Solyc09g065560.2.1 Solyc09g074610.2.1
## 4 4 4
## Solyc09g075150.2.1 Solyc09g091140.2.1 Solyc09g092390.2.1
## 4 4 4
## Solyc09g092470.2.1 Solyc09g098270.2.1 Solyc09g098300.2.1
## 4 4 4
## Solyc10g008130.2.1 Solyc10g008510.1.1 Solyc10g009020.2.1
## 4 4 4
## Solyc10g036680.1.1 Solyc10g045720.1.1 Solyc10g050410.1.1
## 4 4 4
## Solyc10g050970.1.1 Solyc10g052550.1.1 Solyc10g078340.1.1
## 4 4 4
## Solyc10g078950.1.1 Solyc10g081180.1.1 Solyc10g085360.1.1
## 4 4 4
## Solyc10g086700.1.1 Solyc11g005670.1.1 Solyc11g007830.1.1
## 4 4 4
## Solyc11g011300.1.1 Solyc11g011940.1.1 Solyc11g051200.1.1
## 4 4 4
## Solyc11g066380.1.1 Solyc11g066910.1.1 Solyc11g067270.1.1
## 4 4 4
## Solyc11g070150.1.1 Solyc11g071420.1.1 Solyc11g071740.1.1
## 4 4 4
## Solyc12g005590.1.1 Solyc12g009340.1.1 Solyc12g010110.1.1
## 4 4 4
## Solyc12g010170.1.1 Solyc12g010540.1.1 Solyc12g013630.1.1
## 4 4 4
## Solyc12g017800.1.1 Solyc12g019390.1.1 Solyc12g033040.1.1
## 4 4 4
## Solyc12g036810.1.1 Solyc12g040270.1.1 Solyc12g043110.1.1
## 4 4 4
## Solyc12g049300.1.1 Solyc12g049350.1.1 Solyc12g049390.1.1
## 4 4 4
## Solyc12g056610.1.1 Solyc12g062350.1.1 Solyc12g087870.1.1
## 4 4 4
## Solyc12g095830.1.1 Solyc12g095900.1.1 Solyc12g099140.1.1
## 4 4 4
## Solyc12g099540.1.1 Solyc01g005580.2.1 Solyc01g005780.1.1
## 4 5 5
## Solyc01g006280.2.1 Solyc01g006460.1.1 Solyc01g057910.2.1
## 5 5 5
## Solyc01g058320.2.1 Solyc01g079690.2.1 Solyc01g079980.2.1
## 5 5 5
## Solyc01g080540.2.1 Solyc01g088100.2.1 Solyc01g088800.2.1
## 5 5 5
## Solyc01g091570.2.1 Solyc01g096880.2.1 Solyc01g097750.1.1
## 5 5 5
## Solyc01g099050.2.1 Solyc01g103590.2.1 Solyc01g106660.1.1
## 5 5 5
## Solyc01g107780.2.1 Solyc01g111810.2.1 Solyc02g021110.1.1
## 5 5 5
## Solyc02g036240.1.1 Solyc02g072300.2.1 Solyc02g072400.1.1
## 5 5 5
## Solyc02g077100.2.1 Solyc02g083430.1.1 Solyc02g084260.1.1
## 5 5 5
## Solyc02g087880.2.1 Solyc02g091460.2.1 Solyc02g092470.2.1
## 5 5 5
## Solyc02g093150.2.1 Solyc02g093180.2.1 Solyc03g006950.1.1
## 5 5 5
## Solyc03g033500.2.1 Solyc03g034060.2.1 Solyc03g044230.1.1
## 5 5 5
## Solyc03g044810.1.1 Solyc03g051940.1.1 Solyc03g082400.2.1
## 5 5 5
## Solyc03g093970.2.1 Solyc03g095360.2.1 Solyc03g097320.2.1
## 5 5 5
## Solyc03g112010.2.1 Solyc03g121170.2.1 Solyc04g005760.1.1
## 5 5 5
## Solyc04g026020.2.1 Solyc04g040120.1.1 Solyc04g047680.1.1
## 5 5 5
## Solyc04g052990.1.1 Solyc04g055090.1.1 Solyc04g057860.1.1
## 5 5 5
## Solyc04g064590.1.1 Solyc04g076120.2.1 Solyc04g082170.2.1
## 5 5 5
## Solyc04g082180.2.1 Solyc05g007710.2.1 Solyc05g008820.2.1
## 5 5 5
## Solyc05g011900.1.1 Solyc05g014040.1.1 Solyc05g052390.2.1
## 5 5 5
## Solyc05g053030.1.1 Solyc06g008270.2.1 Solyc06g009280.1.1
## 5 5 5
## Solyc06g017930.1.1 Solyc06g050300.1.1 Solyc06g054390.2.1
## 5 5 5
## Solyc06g054560.2.1 Solyc06g064510.2.1 Solyc06g066200.1.1
## 5 5 5
## Solyc06g069100.1.1 Solyc06g071100.2.1 Solyc06g073150.2.1
## 5 5 5
## Solyc06g073920.2.1 Solyc06g076890.1.1 Solyc06g083420.1.1
## 5 5 5
## Solyc06g083460.2.1 Solyc07g040740.2.1 Solyc07g055840.2.1
## 5 5 5
## Solyc08g005200.2.1 Solyc08g006850.2.1 Solyc08g007610.1.1
## 5 5 5
## Solyc08g008370.2.1 Solyc08g016010.2.1 Solyc08g048280.1.1
## 5 5 5
## Solyc08g066880.2.1 Solyc08g075030.2.1 Solyc08g077950.1.1
## 5 5 5
## Solyc08g079160.2.1 Solyc08g079920.1.1 Solyc09g005170.1.1
## 5 5 5
## Solyc09g007280.2.1 Solyc09g008520.2.1 Solyc09g009020.2.1
## 5 5 5
## Solyc09g009110.2.1 Solyc09g012040.1.1 Solyc09g015800.1.1
## 5 5 5
## Solyc09g061760.1.1 Solyc09g064940.2.1 Solyc09g074240.1.1
## 5 5 5
## Solyc09g089960.1.1 Solyc09g090420.2.1 Solyc09g092580.2.1
## 5 5 5
## Solyc10g005880.2.1 Solyc10g007610.2.1 Solyc10g008480.2.1
## 5 5 5
## Solyc10g009090.2.1 Solyc10g018850.1.1 Solyc10g046790.1.1
## 5 5 5
## Solyc10g052500.1.1 Solyc10g054040.1.1 Solyc10g054970.1.1
## 5 5 5
## Solyc10g079750.1.1 Solyc10g083950.1.1 Solyc10g084280.1.1
## 5 5 5
## Solyc11g007220.1.1 Solyc11g008930.1.1 Solyc11g013580.1.1
## 5 5 5
## Solyc11g030390.1.1 Solyc11g039980.1.1 Solyc11g056270.1.1
## 5 5 5
## Solyc11g062220.1.1 Solyc11g066680.1.1 Solyc11g071700.1.1
## 5 5 5
## Solyc11g071760.1.1 Solyc11g072700.1.1 Solyc12g006770.1.1
## 5 5 5
## Solyc12g008910.1.1 Solyc12g009450.1.1 Solyc12g009620.1.1
## 5 5 5
## Solyc12g014070.1.1 Solyc12g015700.1.1 Solyc12g027740.1.1
## 5 5 5
## Solyc12g044340.1.1 Solyc12g044920.1.1 Solyc12g056650.1.1
## 5 5 5
## Solyc12g088830.1.1 Solyc12g089180.1.1 Solyc12g096160.1.1
## 5 5 5
## Solyc01g006920.2.1 Solyc01g007990.2.1 Solyc01g009630.2.1
## 6 6 6
## Solyc01g009890.1.1 Solyc01g010390.2.1 Solyc01g015060.1.1
## 6 6 6
## Solyc01g057840.2.1 Solyc01g068070.2.1 Solyc01g090320.2.1
## 6 6 6
## Solyc01g098090.2.1 Solyc01g099160.2.1 Solyc01g099310.2.1
## 6 6 6
## Solyc01g103250.2.1 Solyc01g105540.2.1 Solyc01g106870.2.1
## 6 6 6
## Solyc01g107810.2.1 Solyc01g108540.2.1 Solyc01g109440.2.1
## 6 6 6
## Solyc02g038680.1.1 Solyc02g064800.2.1 Solyc02g069210.2.1
## 6 6 6
## Solyc02g069250.2.1 Solyc02g070240.2.1 Solyc02g071500.2.1
## 6 6 6
## Solyc02g071580.2.1 Solyc02g071610.2.1 Solyc02g071830.1.1
## 6 6 6
## Solyc02g072350.1.1 Solyc02g080790.2.1 Solyc03g006030.2.1
## 6 6 6
## Solyc03g031450.2.1 Solyc03g032160.2.1 Solyc03g033840.2.1
## 6 6 6
## Solyc03g043890.2.1 Solyc03g082430.1.1 Solyc03g123910.2.1
## 6 6 6
## Solyc04g006940.2.1 Solyc04g011740.2.1 Solyc04g015080.2.1
## 6 6 6
## Solyc04g051350.2.1 Solyc04g074450.1.1 Solyc04g079520.2.1
## 6 6 6
## Solyc05g005640.2.1 Solyc05g007350.1.1 Solyc05g008210.2.1
## 6 6 6
## Solyc05g018220.1.1 Solyc05g050340.2.1 Solyc05g055260.2.1
## 6 6 6
## Solyc06g065790.1.1 Solyc06g069370.2.1 Solyc06g072450.1.1
## 6 6 6
## Solyc06g073030.1.1 Solyc06g074840.2.1 Solyc06g074900.1.1
## 6 6 6
## Solyc06g075920.1.1 Solyc06g083100.1.1 Solyc06g083960.1.1
## 6 6 6
## Solyc07g021050.1.1 Solyc07g021230.1.1 Solyc07g032590.1.1
## 6 6 6
## Solyc07g043110.1.1 Solyc07g052770.2.1 Solyc07g056000.2.1
## 6 6 6
## Solyc07g061740.2.1 Solyc07g062490.1.1 Solyc07g063400.2.1
## 6 6 6
## Solyc07g065500.1.1 Solyc07g065820.2.1 Solyc07g066260.2.1
## 6 6 6
## Solyc08g005020.2.1 Solyc08g006860.2.1 Solyc08g007160.2.1
## 6 6 6
## Solyc08g014240.2.1 Solyc08g014580.2.1 Solyc08g067000.2.1
## 6 6 6
## Solyc08g074630.1.1 Solyc08g076890.2.1 Solyc08g079190.1.1
## 6 6 6
## Solyc08g080380.2.1 Solyc09g009510.2.1 Solyc09g010950.2.1
## 6 6 6
## Solyc09g011590.2.1 Solyc09g055190.1.1 Solyc09g082870.1.1
## 6 6 6
## Solyc09g090190.2.1 Solyc09g090250.2.1 Solyc09g090970.2.1
## 6 6 6
## Solyc09g091040.2.1 Solyc09g092760.2.1 Solyc10g006820.2.1
## 6 6 6
## Solyc10g047210.1.1 Solyc10g079460.1.1 Solyc10g085030.1.1
## 6 6 6
## Solyc10g085630.1.1 Solyc10g085870.1.1 Solyc10g086030.1.1
## 6 6 6
## Solyc10g086070.1.1 Solyc11g011740.1.1 Solyc11g012410.1.1
## 6 6 6
## Solyc11g065400.1.1 Solyc11g072560.1.1 Solyc11g072720.1.1
## 6 6 6
## Solyc12g005340.1.1 Solyc12g006850.1.1 Solyc12g007260.1.1
## 6 6 6
## Solyc12g009910.1.1 Solyc12g014630.1.1 Solyc12g056700.1.1
## 6 6 6
## Solyc12g096710.1.1 Solyc12g098180.1.1 Solyc12g099740.1.1
## 6 6 6
## Solyc01g006580.2.1 Solyc01g007160.2.1 Solyc01g058510.1.1
## 7 7 7
## Solyc01g066190.1.1 Solyc01g067520.2.1 Solyc01g094960.2.1
## 7 7 7
## Solyc01g097280.2.1 Solyc01g097490.1.1 Solyc01g108570.2.1
## 7 7 7
## Solyc02g032590.1.1 Solyc02g066910.2.1 Solyc02g069840.2.1
## 7 7 7
## Solyc02g070400.2.1 Solyc02g071860.2.1 Solyc02g079990.2.1
## 7 7 7
## Solyc02g081670.1.1 Solyc02g087620.2.1 Solyc02g090860.2.1
## 7 7 7
## Solyc03g020080.2.1 Solyc03g032180.2.1 Solyc03g044840.1.1
## 7 7 7
## Solyc03g058960.1.1 Solyc03g059180.2.1 Solyc03g082810.1.1
## 7 7 7
## Solyc03g098300.1.1 Solyc03g110880.2.1 Solyc03g111130.1.1
## 7 7 7
## Solyc03g113960.2.1 Solyc03g122090.2.1 Solyc04g009370.2.1
## 7 7 7
## Solyc04g009490.1.1 Solyc04g011440.2.1 Solyc04g052940.1.1
## 7 7 7
## Solyc04g081800.1.1 Solyc05g005330.2.1 Solyc05g005950.2.1
## 7 7 7
## Solyc05g006640.2.1 Solyc05g050490.2.1 Solyc06g008710.1.1
## 7 7 7
## Solyc06g011460.1.1 Solyc06g024240.1.1 Solyc06g036670.1.1
## 7 7 7
## Solyc06g052140.1.1 Solyc06g068240.2.1 Solyc06g068650.2.1
## 7 7 7
## Solyc06g075270.2.1 Solyc06g083190.2.1 Solyc07g021660.1.1
## 7 7 7
## Solyc07g032610.1.1 Solyc07g041550.2.1 Solyc07g054560.1.1
## 7 7 7
## Solyc07g056670.2.1 Solyc07g062610.2.1 Solyc07g062910.2.1
## 7 7 7
## Solyc07g063770.2.1 Solyc08g005290.2.1 Solyc08g005720.2.1
## 7 7 7
## Solyc08g013880.2.1 Solyc08g076620.1.1 Solyc08g079370.1.1
## 7 7 7
## Solyc08g080620.1.1 Solyc08g082040.2.1 Solyc09g011480.2.1
## 7 7 7
## Solyc09g011540.2.1 Solyc09g014510.2.1 Solyc09g055870.2.1
## 7 7 7
## Solyc09g057700.1.1 Solyc09g066410.1.1 Solyc09g075910.1.1
## 7 7 7
## Solyc09g091550.2.1 Solyc09g091670.2.1 Solyc10g012180.1.1
## 7 7 7
## Solyc10g048120.1.1 Solyc10g051390.1.1 Solyc10g052530.1.1
## 7 7 7
## Solyc10g078680.1.1 Solyc11g007850.1.1 Solyc11g012660.1.1
## 7 7 7
## Solyc11g039420.1.1 Solyc11g039990.1.1 Solyc11g062130.1.1
## 7 7 7
## Solyc11g066670.1.1 Solyc11g072760.1.1 Solyc12g005330.1.1
## 7 7 7
## Solyc12g006530.1.1 Solyc12g007070.1.1 Solyc12g009300.1.1
## 7 7 7
## Solyc12g035240.1.1 Solyc12g044710.1.1 Solyc12g087900.1.1
## 7 7 7
## Solyc12g096410.1.1 Solyc12g096750.1.1 Solyc12g099250.1.1
## 7 7 7
## Solyc01g008000.2.1 Solyc01g067870.2.1 Solyc01g094270.2.1
## 8 8 8
## Solyc01g096740.2.1 Solyc01g099770.2.1 Solyc01g105150.2.1
## 8 8 8
## Solyc02g021620.2.1 Solyc02g070800.2.1 Solyc02g071490.2.1
## 8 8 8
## Solyc02g071720.2.1 Solyc02g079510.2.1 Solyc02g081040.2.1
## 8 8 8
## Solyc02g081620.2.1 Solyc02g082040.2.1 Solyc02g085220.2.1
## 8 8 8
## Solyc02g090350.2.1 Solyc02g091300.2.1 Solyc02g092330.2.1
## 8 8 8
## Solyc03g006630.2.1 Solyc03g025470.2.1 Solyc03g033980.2.1
## 8 8 8
## Solyc03g078170.1.1 Solyc03g112540.2.1 Solyc03g119120.2.1
## 8 8 8
## Solyc03g120990.2.1 Solyc03g121250.2.1 Solyc04g007760.2.1
## 8 8 8
## Solyc04g009150.1.1 Solyc04g009910.2.1 Solyc04g011400.2.1
## 8 8 8
## Solyc04g011680.1.1 Solyc04g057920.1.1 Solyc04g077270.2.1
## 8 8 8
## Solyc05g005920.2.1 Solyc06g008300.2.1 Solyc06g060980.1.1
## 8 8 8
## Solyc06g072870.1.1 Solyc06g076710.1.1 Solyc06g082630.2.1
## 8 8 8
## Solyc07g005910.2.1 Solyc07g019640.1.1 Solyc07g043680.2.1
## 8 8 8
## Solyc07g055000.1.1 Solyc07g056440.2.1 Solyc07g062530.2.1
## 8 8 8
## Solyc07g062920.2.1 Solyc08g007730.2.1 Solyc08g041950.1.1
## 8 8 8
## Solyc08g044400.1.1 Solyc08g078820.2.1 Solyc08g080650.1.1
## 8 8 8
## Solyc09g007760.2.1 Solyc09g009910.2.1 Solyc09g011020.2.1
## 8 8 8
## Solyc09g014730.2.1 Solyc09g037150.1.1 Solyc09g047860.1.1
## 8 8 8
## Solyc09g065160.2.1 Solyc09g089780.2.1 Solyc10g006700.1.1
## 8 8 8
## Solyc10g054170.1.1 Solyc10g074640.1.1 Solyc10g076370.1.1
## 8 8 8
## Solyc10g076710.1.1 Solyc10g079570.1.1 Solyc10g079650.1.1
## 8 8 8
## Solyc10g080640.1.1 Solyc10g083480.1.1 Solyc10g084940.1.1
## 8 8 8
## Solyc11g005320.1.1 Solyc11g013400.1.1 Solyc11g028120.1.1
## 8 8 8
## Solyc11g056510.1.1 Solyc11g073200.1.1 Solyc12g055700.1.1
## 8 8 8
## Solyc12g094590.1.1 Solyc01g008720.1.1 Solyc01g020520.2.1
## 8 9 9
## Solyc01g057260.2.1 Solyc01g087820.2.1 Solyc01g095200.2.1
## 9 9 9
## Solyc01g106640.2.1 Solyc01g111250.2.1 Solyc02g005220.1.1
## 9 9 9
## Solyc02g068320.2.1 Solyc02g072330.1.1 Solyc02g078280.2.1
## 9 9 9
## Solyc02g081820.2.1 Solyc02g082360.2.1 Solyc02g082870.2.1
## 9 9 9
## Solyc02g083050.1.1 Solyc02g084770.2.1 Solyc02g085120.2.1
## 9 9 9
## Solyc02g085560.2.1 Solyc02g087330.2.1 Solyc03g046370.1.1
## 9 9 9
## Solyc03g080090.2.1 Solyc03g083540.2.1 Solyc03g097700.2.1
## 9 9 9
## Solyc03g112710.1.1 Solyc04g009350.2.1 Solyc04g010310.2.1
## 9 9 9
## Solyc04g025750.2.1 Solyc04g058140.2.1 Solyc04g071160.2.1
## 9 9 9
## Solyc04g081390.2.1 Solyc04g082790.2.1 Solyc05g008680.1.1
## 9 9 9
## Solyc05g013270.1.1 Solyc05g016230.2.1 Solyc05g023900.1.1
## 9 9 9
## Solyc06g043070.2.1 Solyc06g063040.1.1 Solyc06g072000.1.1
## 9 9 9
## Solyc06g072080.2.1 Solyc07g017750.2.1 Solyc07g021180.1.1
## 9 9 9
## Solyc07g021340.2.1 Solyc07g039550.2.1 Solyc08g007690.1.1
## 9 9 9
## Solyc08g029260.1.1 Solyc08g062920.2.1 Solyc08g066660.1.1
## 9 9 9
## Solyc08g069060.2.1 Solyc08g079200.1.1 Solyc08g079270.2.1
## 9 9 9
## Solyc08g079280.2.1 Solyc09g059040.2.1 Solyc09g065210.2.1
## 9 9 9
## Solyc10g012240.2.1 Solyc10g050660.1.1 Solyc10g076240.1.1
## 9 9 9
## Solyc10g079340.1.1 Solyc10g085640.1.1 Solyc11g007280.1.1
## 9 9 9
## Solyc11g007770.1.1 Solyc11g013210.1.1 Solyc11g013270.1.1
## 9 9 9
## Solyc11g018800.1.1 Solyc11g028150.1.1 Solyc11g069710.1.1
## 9 9 9
## Solyc11g072110.1.1 Solyc12g006720.1.1 Solyc12g009920.1.1
## 9 9 9
## Solyc12g011240.1.1 Solyc12g014000.1.1 Solyc12g039150.1.1
## 9 9 9
## Solyc12g040390.1.1 Solyc12g042340.1.1 Solyc12g042680.1.1
## 9 9 9
## Solyc12g049190.1.1 Solyc12g056480.1.1 Solyc12g096150.1.1
## 9 9 9
## Solyc01g016970.1.1 Solyc01g020440.2.1 Solyc01g056650.1.1
## 10 10 10
## Solyc01g060140.2.1 Solyc01g087800.2.1 Solyc01g091350.2.1
## 10 10 10
## Solyc01g102990.2.1 Solyc01g105310.2.1 Solyc02g005510.2.1
## 10 10 10
## Solyc02g043820.1.1 Solyc02g069260.2.1 Solyc02g070130.1.1
## 10 10 10
## Solyc02g071200.2.1 Solyc02g071430.2.1 Solyc02g077430.2.1
## 10 10 10
## Solyc02g078610.2.1 Solyc02g079320.2.1 Solyc02g080990.1.1
## 10 10 10
## Solyc02g087680.1.1 Solyc02g088650.1.1 Solyc02g093360.2.1
## 10 10 10
## Solyc03g007500.2.1 Solyc03g079980.1.1 Solyc03g095210.1.1
## 10 10 10
## Solyc03g118720.2.1 Solyc04g009300.2.1 Solyc04g011590.2.1
## 10 10 10
## Solyc04g077340.2.1 Solyc05g009880.2.1 Solyc05g050480.1.1
## 10 10 10
## Solyc06g043010.1.1 Solyc06g051300.2.1 Solyc06g060410.2.1
## 10 10 10
## Solyc06g073960.2.1 Solyc06g075320.2.1 Solyc06g084820.1.1
## 10 10 10
## Solyc07g045030.2.1 Solyc07g049660.2.1 Solyc08g048370.2.1
## 10 10 10
## Solyc08g067170.1.1 Solyc08g074400.1.1 Solyc08g074650.2.1
## 10 10 10
## Solyc08g079870.1.1 Solyc09g011080.2.1 Solyc09g065030.2.1
## 10 10 10
## Solyc09g072950.1.1 Solyc09g074450.1.1 Solyc10g006540.2.1
## 10 10 10
## Solyc10g047660.1.1 Solyc10g049890.1.1 Solyc10g055800.1.1
## 10 10 10
## Solyc10g083350.1.1 Solyc10g084480.1.1 Solyc11g011290.1.1
## 10 10 10
## Solyc11g011640.1.1 Solyc11g011960.1.1 Solyc11g020590.1.1
## 10 10 10
## Solyc11g066600.1.1 Solyc12g044930.1.1 Solyc12g057060.1.1
## 10 10 10
## Solyc12g088460.1.1 Solyc12g089010.1.1 Solyc01g005610.2.1
## 10 10 11
## Solyc01g006300.2.1 Solyc01g008440.2.1 Solyc01g008730.2.1
## 11 11 11
## Solyc01g010360.2.1 Solyc01g011510.2.1 Solyc01g014990.1.1
## 11 11 11
## Solyc01g065740.2.1 Solyc01g068510.1.1 Solyc01g073780.2.1
## 11 11 11
## Solyc01g087810.2.1 Solyc01g099020.2.1 Solyc02g036390.1.1
## 11 11 11
## Solyc02g062580.2.1 Solyc02g067600.1.1 Solyc02g077000.2.1
## 11 11 11
## Solyc02g079330.2.1 Solyc02g086290.1.1 Solyc02g088220.2.1
## 11 11 11
## Solyc02g088290.2.1 Solyc02g090690.1.1 Solyc03g082670.2.1
## 11 11 11
## Solyc03g093540.1.1 Solyc03g111160.2.1 Solyc03g115430.2.1
## 11 11 11
## Solyc03g121210.2.1 Solyc04g014400.2.1 Solyc04g015430.2.1
## 11 11 11
## Solyc04g079350.1.1 Solyc04g082430.2.1 Solyc04g082820.2.1
## 11 11 11
## Solyc05g005060.2.1 Solyc05g006900.1.1 Solyc05g008070.2.1
## 11 11 11
## Solyc05g013320.1.1 Solyc05g021430.1.1 Solyc06g005670.2.1
## 11 11 11
## Solyc06g069380.2.1 Solyc06g083850.2.1 Solyc07g008110.2.1
## 11 11 11
## Solyc07g017640.2.1 Solyc07g040820.1.1 Solyc07g054230.2.1
## 11 11 11
## Solyc07g054370.2.1 Solyc07g056420.2.1 Solyc08g007710.2.1
## 11 11 11
## Solyc08g044360.1.1 Solyc08g074410.2.1 Solyc09g007140.2.1
## 11 11 11
## Solyc09g009850.2.1 Solyc09g014320.2.1 Solyc09g064270.2.1
## 11 11 11
## Solyc09g075390.2.1 Solyc09g089820.1.1 Solyc10g054980.1.1
## 11 11 11
## Solyc10g079930.1.1 Solyc11g007870.1.1 Solyc11g013240.1.1
## 11 11 11
## Solyc11g017260.1.1 Solyc11g018740.1.1 Solyc11g050860.1.1
## 11 11 11
## Solyc11g063540.1.1 Solyc11g072990.1.1 Solyc12g096590.1.1
## 11 11 11
## Solyc12g099730.1.1 Solyc01g014530.2.1 Solyc01g091030.2.1
## 11 12 12
## Solyc01g094000.2.1 Solyc01g108950.1.1 Solyc01g110570.2.1
## 12 12 12
## Solyc02g061660.1.1 Solyc02g063160.2.1 Solyc02g069270.2.1
## 12 12 12
## Solyc02g069540.1.1 Solyc02g079710.2.1 Solyc02g082930.2.1
## 12 12 12
## Solyc02g087090.2.1 Solyc02g090450.2.1 Solyc03g025360.2.1
## 12 12 12
## Solyc03g032110.1.1 Solyc03g094150.1.1 Solyc03g111530.2.1
## 12 12 12
## Solyc03g112970.1.1 Solyc04g011940.1.1 Solyc04g050070.1.1
## 12 12 12
## Solyc04g076630.2.1 Solyc05g018120.1.1 Solyc05g050470.1.1
## 12 12 12
## Solyc05g053360.2.1 Solyc06g062680.1.1 Solyc07g006450.1.1
## 12 12 12
## Solyc07g017930.1.1 Solyc07g045090.2.1 Solyc07g049120.1.1
## 12 12 12
## Solyc07g052400.2.1 Solyc08g005770.2.1 Solyc08g007300.1.1
## 12 12 12
## Solyc08g007310.2.1 Solyc08g014330.2.1 Solyc08g065460.1.1
## 12 12 12
## Solyc08g075240.2.1 Solyc08g075610.1.1 Solyc08g078800.1.1
## 12 12 12
## Solyc09g010550.2.1 Solyc09g090870.2.1 Solyc10g009290.1.1
## 12 12 12
## Solyc10g047680.1.1 Solyc10g052510.1.1 Solyc10g078860.1.1
## 12 12 12
## Solyc10g084490.1.1 Solyc10g086220.1.1 Solyc10g086600.1.1
## 12 12 12
## Solyc11g044610.1.1 Solyc11g066590.1.1 Solyc12g006590.1.1
## 12 12 12
## Solyc12g017660.1.1 Solyc12g056300.1.1 Solyc01g006540.2.1
## 12 12 13
## Solyc01g079970.2.1 Solyc01g080570.2.1 Solyc01g080660.2.1
## 13 13 13
## Solyc01g090610.2.1 Solyc01g094530.2.1 Solyc01g099190.2.1
## 13 13 13
## Solyc02g061610.1.1 Solyc02g080850.1.1 Solyc02g085650.2.1
## 13 13 13
## Solyc03g007570.2.1 Solyc03g033900.1.1 Solyc03g062910.2.1
## 13 13 13
## Solyc03g082450.2.1 Solyc03g098530.1.1 Solyc03g115350.1.1
## 13 13 13
## Solyc04g005540.2.1 Solyc04g010020.2.1 Solyc04g024690.1.1
## 13 13 13
## Solyc04g054740.2.1 Solyc04g076160.1.1 Solyc04g080760.2.1
## 13 13 13
## Solyc05g005800.2.1 Solyc05g009140.2.1 Solyc05g054330.2.1
## 13 13 13
## Solyc05g056050.2.1 Solyc06g005290.2.1 Solyc06g065070.1.1
## 13 13 13
## Solyc06g082760.2.1 Solyc06g084060.2.1 Solyc07g055180.2.1
## 13 13 13
## Solyc08g006520.1.1 Solyc08g008430.2.1 Solyc08g015730.1.1
## 13 13 13
## Solyc08g015750.1.1 Solyc08g028940.1.1 Solyc08g042130.2.1
## 13 13 13
## Solyc09g008110.1.1 Solyc09g011010.2.1 Solyc09g018070.1.1
## 13 13 13
## Solyc10g006620.1.1 Solyc10g038140.1.1 Solyc10g079030.1.1
## 13 13 13
## Solyc10g079180.2.1 Solyc10g080790.1.1 Solyc10g081980.1.1
## 13 13 13
## Solyc11g013700.1.1 Solyc11g019860.1.1 Solyc11g028100.1.1
## 13 13 13
## Solyc12g010020.1.1 Solyc01g066420.2.1 Solyc01g081430.2.1
## 13 14 14
## Solyc01g096350.2.1 Solyc01g106820.2.1 Solyc01g107830.2.1
## 14 14 14
## Solyc01g111940.2.1 Solyc02g030210.2.1 Solyc02g080760.1.1
## 14 14 14
## Solyc02g090650.2.1 Solyc02g091210.1.1 Solyc03g006430.2.1
## 14 14 14
## Solyc03g006700.2.1 Solyc03g122120.2.1 Solyc04g007180.1.1
## 14 14 14
## Solyc05g009470.2.1 Solyc06g072230.1.1 Solyc06g073680.2.1
## 14 14 14
## Solyc07g005450.2.1 Solyc07g055480.1.1 Solyc07g063330.2.1
## 14 14 14
## Solyc08g007620.1.1 Solyc08g029380.1.1 Solyc08g074940.2.1
## 14 14 14
## Solyc09g005460.1.1 Solyc09g011500.2.1 Solyc09g031580.2.1
## 14 14 14
## Solyc09g065950.2.1 Solyc10g008230.1.1 Solyc10g009440.2.1
## 14 14 14
## Solyc10g047270.1.1 Solyc10g074970.1.1 Solyc10g080930.1.1
## 14 14 14
## Solyc11g006520.1.1 Solyc11g011580.1.1 Solyc11g018770.1.1
## 14 14 14
## Solyc12g009790.1.1 Solyc12g027870.1.1 Solyc12g044940.1.1
## 14 14 14
## Solyc12g100250.1.1 Solyc01g049680.2.1 Solyc01g067700.2.1
## 14 15 15
## Solyc01g105660.2.1 Solyc01g109810.2.1 Solyc02g050140.2.1
## 15 15 15
## Solyc02g061850.2.1 Solyc02g085720.1.1 Solyc02g088230.2.1
## 15 15 15
## Solyc03g025410.2.1 Solyc03g034430.1.1 Solyc03g111030.2.1
## 15 15 15
## Solyc04g051170.1.1 Solyc04g072260.1.1 Solyc05g015800.2.1
## 15 15 15
## Solyc05g046150.2.1 Solyc05g046190.1.1 Solyc05g051910.1.1
## 15 15 15
## Solyc05g053810.2.1 Solyc06g083910.2.1 Solyc07g007600.2.1
## 15 15 15
## Solyc07g062350.1.1 Solyc08g014380.1.1 Solyc08g048470.1.1
## 15 15 15
## Solyc08g065540.2.1 Solyc08g066190.1.1 Solyc08g080640.1.1
## 15 15 15
## Solyc08g080760.1.1 Solyc09g008760.1.1 Solyc09g010040.1.1
## 15 15 15
## Solyc09g065510.2.1 Solyc09g089490.2.1 Solyc09g091160.1.1
## 15 15 15
## Solyc10g007420.2.1 Solyc10g044480.1.1 Solyc10g086430.1.1
## 15 15 15
## Solyc11g006590.1.1 Solyc11g015900.1.1 Solyc11g027630.1.1
## 15 15 15
## Solyc12g005440.1.1 Solyc12g099010.1.1 Solyc01g102400.2.1
## 15 15 16
## Solyc01g103860.2.1 Solyc01g107940.2.1 Solyc02g014520.2.1
## 16 16 16
## Solyc02g032860.2.1 Solyc02g065090.2.1 Solyc02g072310.2.1
## 16 16 16
## Solyc02g077250.2.1 Solyc03g058260.1.1 Solyc03g082580.2.1
## 16 16 16
## Solyc03g093130.2.1 Solyc03g110900.2.1 Solyc03g115230.2.1
## 16 16 16
## Solyc03g122360.2.1 Solyc04g014870.2.1 Solyc04g079240.2.1
## 16 16 16
## Solyc05g023780.1.1 Solyc06g052090.1.1 Solyc06g083050.2.1
## 16 16 16
## Solyc07g005400.2.1 Solyc07g014690.2.1 Solyc07g017260.2.1
## 16 16 16
## Solyc07g054590.1.1 Solyc08g061160.1.1 Solyc08g067450.1.1
## 16 16 16
## Solyc09g007870.2.1 Solyc09g014860.2.1 Solyc09g061530.1.1
## 16 16 16
## Solyc09g064960.1.1 Solyc09g089510.2.1 Solyc10g050750.1.1
## 16 16 16
## Solyc10g061840.1.1 Solyc10g076330.1.1 Solyc10g086740.1.1
## 16 16 16
## Solyc11g013740.1.1 Solyc11g071990.1.1 Solyc11g073150.1.1
## 16 16 16
## Solyc12g056070.1.1 Solyc01g066610.2.1 Solyc01g099500.1.1
## 16 17 17
## Solyc01g100950.2.1 Solyc01g110380.2.1 Solyc02g014030.1.1
## 17 17 17
## Solyc02g064900.1.1 Solyc02g067640.2.1 Solyc02g070070.1.1
## 17 17 17
## Solyc02g070230.1.1 Solyc02g073580.1.1 Solyc02g083740.1.1
## 17 17 17
## Solyc02g084780.2.1 Solyc02g091020.1.1 Solyc03g025230.2.1
## 17 17 17
## Solyc03g063040.2.1 Solyc03g111760.2.1 Solyc04g008910.1.1
## 17 17 17
## Solyc04g050690.1.1 Solyc04g051830.2.1 Solyc04g071780.2.1
## 17 17 17
## Solyc05g006730.2.1 Solyc05g023660.1.1 Solyc05g033910.1.1
## 17 17 17
## Solyc06g005160.2.1 Solyc06g024290.1.1 Solyc07g006680.1.1
## 17 17 17
## Solyc07g055350.2.1 Solyc08g005080.1.1 Solyc08g005240.1.1
## 17 17 17
## Solyc08g007060.2.1 Solyc08g007360.2.1 Solyc08g007670.1.1
## 17 17 17
## Solyc08g007900.1.1 Solyc08g013690.1.1 Solyc08g079430.2.1
## 17 17 17
## Solyc09g056240.1.1 Solyc10g005260.2.1 Solyc10g012270.1.1
## 17 17 17
## Solyc10g051350.1.1 Solyc10g085370.1.1 Solyc10g085460.1.1
## 17 17 17
## Solyc11g011920.1.1 Solyc11g045570.1.1 Solyc11g064750.1.1
## 17 17 17
## Solyc11g068950.1.1 Solyc12g035290.1.1 Solyc12g056870.1.1
## 17 17 17
## Solyc12g088710.1.1 Solyc01g066330.1.1 Solyc01g079960.2.1
## 17 18 18
## Solyc01g100860.2.1 Solyc01g104700.2.1 Solyc02g038670.1.1
## 18 18 18
## Solyc02g065480.2.1 Solyc02g083000.1.1 Solyc03g019800.2.1
## 18 18 18
## Solyc03g111920.1.1 Solyc04g008970.2.1 Solyc04g010000.2.1
## 18 18 18
## Solyc04g025170.2.1 Solyc05g007610.2.1 Solyc05g010180.2.1
## 18 18 18
## Solyc05g017900.2.1 Solyc05g054350.2.1 Solyc06g066830.2.1
## 18 18 18
## Solyc06g076930.1.1 Solyc06g083890.2.1 Solyc07g006730.2.1
## 18 18 18
## Solyc07g062480.1.1 Solyc08g016280.1.1 Solyc08g016710.1.1
## 18 18 18
## Solyc08g069080.2.1 Solyc08g074830.2.1 Solyc08g080010.1.1
## 18 18 18
## Solyc09g014550.2.1 Solyc09g064560.1.1 Solyc12g043120.1.1
## 18 18 18
## Solyc12g044520.1.1 Solyc12g049510.1.1 Solyc12g055890.1.1
## 18 18 18
## Solyc12g056530.1.1 Solyc12g088250.1.1 Solyc01g067860.2.1
## 18 18 19
## Solyc01g090630.2.1 Solyc01g102710.2.1 Solyc01g105770.2.1
## 19 19 19
## Solyc02g080310.2.1 Solyc02g084250.2.1 Solyc03g062840.1.1
## 19 19 19
## Solyc03g082970.2.1 Solyc03g111970.2.1 Solyc03g120840.1.1
## 19 19 19
## Solyc04g056680.1.1 Solyc04g074850.2.1 Solyc05g025920.2.1
## 19 19 19
## Solyc05g052110.2.1 Solyc06g051920.2.1 Solyc06g075760.1.1
## 19 19 19
## Solyc06g083040.2.1 Solyc07g015980.2.1 Solyc07g054390.1.1
## 19 19 19
## Solyc08g005330.1.1 Solyc08g007790.2.1 Solyc08g068710.1.1
## 19 19 19
## Solyc08g077740.1.1 Solyc08g082150.1.1 Solyc08g082490.1.1
## 19 19 19
## Solyc08g082640.2.1 Solyc09g061750.1.1 Solyc10g076210.1.1
## 19 19 19
## Solyc10g085650.1.1 Solyc11g013390.1.1 Solyc11g070090.1.1
## 19 19 19
## Solyc11g073250.1.1 Solyc12g017820.1.1 Solyc12g044410.1.1
## 19 19 19
## Solyc01g049610.1.1 Solyc01g091160.2.1 Solyc01g096780.2.1
## 20 20 20
## Solyc01g104210.2.1 Solyc01g106670.1.1 Solyc02g037620.1.1
## 20 20 20
## Solyc02g076660.2.1 Solyc02g083550.1.1 Solyc02g089690.2.1
## 20 20 20
## Solyc02g090770.1.1 Solyc03g095390.1.1 Solyc03g095710.2.1
## 20 20 20
## Solyc03g096250.2.1 Solyc03g115520.2.1 Solyc04g011760.2.1
## 20 20 20
## Solyc04g074660.1.1 Solyc04g077940.2.1 Solyc05g006010.2.1
## 20 20 20
## Solyc05g053610.2.1 Solyc08g075490.2.1 Solyc08g079910.1.1
## 20 20 20
## Solyc09g066400.1.1 Solyc09g075710.1.1 Solyc09g089730.2.1
## 20 20 20
## Solyc10g045400.1.1 Solyc10g049530.1.1 Solyc10g079310.1.1
## 20 20 20
## Solyc10g079700.1.1 Solyc10g080320.1.1 Solyc10g086080.1.1
## 20 20 20
## Solyc11g062100.1.1 Solyc11g068590.1.1 Solyc11g072460.1.1
## 20 20 20
## Solyc12g100030.1.1 Solyc01g008500.2.1 Solyc01g073810.2.1
## 20 21 21
## Solyc01g096580.2.1 Solyc01g105690.2.1 Solyc02g071000.1.1
## 21 21 21
## Solyc02g071090.2.1 Solyc02g081870.2.1 Solyc02g082180.2.1
## 21 21 21
## Solyc02g090260.1.1 Solyc02g094570.2.1 Solyc03g096140.1.1
## 21 21 21
## Solyc03g118220.1.1 Solyc04g008330.1.1 Solyc04g064470.1.1
## 21 21 21
## Solyc04g082920.2.1 Solyc05g005940.2.1 Solyc05g006000.2.1
## 21 21 21
## Solyc05g007290.1.1 Solyc05g014800.1.1 Solyc05g050640.1.1
## 21 21 21
## Solyc07g053240.2.1 Solyc08g014230.2.1 Solyc08g065350.2.1
## 21 21 21
## Solyc08g068700.1.1 Solyc08g081670.1.1 Solyc09g007120.2.1
## 21 21 21
## Solyc09g014240.2.1 Solyc10g007060.2.1 Solyc10g050950.1.1
## 21 21 21
## Solyc10g054840.1.1 Solyc10g076200.1.1 Solyc10g078290.1.1
## 21 21 21
## Solyc10g080430.1.1 Solyc11g005280.1.1 Solyc11g011840.1.1
## 21 21 21
## Solyc11g020060.1.1 Solyc12g094700.1.1 Solyc01g007590.2.1
## 21 21 22
## Solyc01g010050.2.1 Solyc01g098670.1.1 Solyc01g099180.2.1
## 22 22 22
## Solyc02g070890.2.1 Solyc03g033830.2.1 Solyc04g014740.1.1
## 22 22 22
## Solyc04g054250.2.1 Solyc05g012320.1.1 Solyc05g013010.2.1
## 22 22 22
## Solyc06g008660.2.1 Solyc06g051410.2.1 Solyc06g062900.2.1
## 22 22 22
## Solyc06g073800.2.1 Solyc07g055470.2.1 Solyc08g007340.2.1
## 22 22 22
## Solyc08g047940.1.1 Solyc08g079890.1.1 Solyc08g081410.2.1
## 22 22 22
## Solyc09g005080.1.1 Solyc09g010800.2.1 Solyc09g098130.1.1
## 22 22 22
## Solyc10g006170.2.1 Solyc10g011660.2.1 Solyc10g018870.1.1
## 22 22 22
## Solyc10g083690.2.1 Solyc10g085530.1.1 Solyc11g008110.1.1
## 22 22 22
## Solyc12g016170.1.1 Solyc12g044820.1.1 Solyc01g005260.2.1
## 22 22 23
## Solyc01g009580.1.1 Solyc01g080080.2.1 Solyc01g088120.1.1
## 23 23 23
## Solyc01g098950.1.1 Solyc01g106360.2.1 Solyc01g110220.1.1
## 23 23 23
## Solyc02g032340.1.1 Solyc02g063090.2.1 Solyc02g068310.2.1
## 23 23 23
## Solyc02g069280.2.1 Solyc02g080080.2.1 Solyc03g025220.2.1
## 23 23 23
## Solyc03g034110.2.1 Solyc03g059000.1.1 Solyc03g112820.2.1
## 23 23 23
## Solyc03g118020.2.1 Solyc04g071070.2.1 Solyc04g074910.2.1
## 23 23 23
## Solyc05g008720.1.1 Solyc05g012640.2.1 Solyc05g013470.2.1
## 23 23 23
## Solyc05g046020.2.1 Solyc06g034260.1.1 Solyc06g054440.2.1
## 23 23 23
## Solyc06g062530.2.1 Solyc06g076200.1.1 Solyc07g063450.1.1
## 23 23 23
## Solyc07g064910.2.1 Solyc07g065570.1.1 Solyc08g048450.2.1
## 23 23 23
## Solyc08g080670.1.1 Solyc08g080770.2.1 Solyc09g011270.2.1
## 23 23 23
## Solyc09g089720.1.1 Solyc09g089860.2.1 Solyc09g098540.2.1
## 23 23 23
## Solyc11g062310.1.1 Solyc12g007180.1.1 Solyc12g007250.1.1
## 23 23 23
## Solyc12g009540.1.1 Solyc12g089030.1.1 Solyc12g100180.1.1
## 23 23 23
## Solyc01g014960.1.1 Solyc01g095120.2.1 Solyc01g098120.2.1
## 24 24 24
## Solyc02g021070.1.1 Solyc02g050200.1.1 Solyc02g065330.1.1
## 24 24 24
## Solyc02g086210.2.1 Solyc03g083700.1.1 Solyc03g097580.2.1
## 24 24 24
## Solyc04g005160.1.1 Solyc04g018100.2.1 Solyc04g050270.1.1
## 24 24 24
## Solyc04g074440.1.1 Solyc04g082260.2.1 Solyc05g011890.1.1
## 24 24 24
## Solyc05g050070.1.1 Solyc06g005150.2.1 Solyc06g009490.2.1
## 24 24 24
## Solyc06g033920.1.1 Solyc06g054620.2.1 Solyc06g059780.1.1
## 24 24 24
## Solyc07g018240.1.1 Solyc07g042700.2.1 Solyc07g049780.1.1
## 24 24 24
## Solyc08g079980.1.1 Solyc09g061390.1.1 Solyc09g074290.1.1
## 24 24 24
## Solyc10g007700.2.1 Solyc10g037900.1.1 Solyc11g028090.1.1
## 24 24 24
## Solyc12g006020.1.1 Solyc01g006560.2.1 Solyc01g066950.1.1
## 24 25 25
## Solyc01g095840.1.1 Solyc01g099460.1.1 Solyc01g102910.2.1
## 25 25 25
## Solyc02g005450.1.1 Solyc02g011800.1.1 Solyc02g079470.1.1
## 25 25 25
## Solyc03g005770.1.1 Solyc03g045140.2.1 Solyc03g058470.1.1
## 25 25 25
## Solyc03g093560.1.1 Solyc03g094060.2.1 Solyc03g095750.1.1
## 25 25 25
## Solyc03g114560.2.1 Solyc04g015400.2.1 Solyc04g079260.2.1
## 25 25 25
## Solyc05g013260.1.1 Solyc05g051370.2.1 Solyc06g083090.2.1
## 25 25 25
## Solyc07g005620.2.1 Solyc07g008350.2.1 Solyc07g054600.2.1
## 25 25 25
## Solyc08g074290.2.1 Solyc08g074360.2.1 Solyc08g079860.1.1
## 25 25 25
## Solyc08g079880.1.1 Solyc09g009460.2.1 Solyc11g030710.1.1
## 25 25 25
## Solyc11g073260.1.1 Solyc12g088470.1.1 Solyc12g095960.1.1
## 25 25 25
## Solyc01g017050.1.1 Solyc01g050010.2.1 Solyc01g099580.1.1
## 26 26 26
## Solyc01g100770.2.1 Solyc01g106830.2.1 Solyc02g062060.1.1
## 26 26 26
## Solyc02g062130.2.1 Solyc02g065220.2.1 Solyc02g071920.2.1
## 26 26 26
## Solyc02g080290.2.1 Solyc02g088170.1.1 Solyc03g083850.1.1
## 26 26 26
## Solyc03g111140.2.1 Solyc03g117410.2.1 Solyc04g007330.1.1
## 26 26 26
## Solyc05g012740.1.1 Solyc05g013850.2.1 Solyc05g047510.1.1
## 26 26 26
## Solyc06g048960.2.1 Solyc06g064500.2.1 Solyc07g052730.2.1
## 26 26 26
## Solyc08g014420.2.1 Solyc08g068370.2.1 Solyc08g081040.2.1
## 26 26 26
## Solyc09g009670.2.1 Solyc10g017710.1.1 Solyc10g037950.1.1
## 26 26 26
## Solyc10g048000.1.1 Solyc10g049270.1.1 Solyc10g061970.1.1
## 26 26 26
## Solyc01g008280.2.1 Solyc01g011430.2.1 Solyc01g080360.2.1
## 27 27 27
## Solyc01g104540.2.1 Solyc02g065280.2.1 Solyc02g069140.1.1
## 27 27 27
## Solyc02g085110.2.1 Solyc02g086510.2.1 Solyc02g090790.1.1
## 27 27 27
## Solyc02g091170.2.1 Solyc03g082830.1.1 Solyc04g011840.1.1
## 27 27 27
## Solyc04g016550.2.1 Solyc04g064440.1.1 Solyc04g064800.2.1
## 27 27 27
## Solyc04g077900.1.1 Solyc04g078150.2.1 Solyc05g018570.2.1
## 27 27 27
## Solyc06g054050.1.1 Solyc06g073760.2.1 Solyc08g061920.1.1
## 27 27 27
## Solyc08g067610.2.1 Solyc08g074610.1.1 Solyc09g075400.2.1
## 27 27 27
## Solyc12g019320.1.1 Solyc01g009270.1.1 Solyc01g056430.1.1
## 27 28 28
## Solyc01g058590.1.1 Solyc01g108580.2.1 Solyc01g110950.2.1
## 28 28 28
## Solyc02g030540.1.1 Solyc02g077020.2.1 Solyc02g078970.2.1
## 28 28 28
## Solyc02g080830.1.1 Solyc02g090930.2.1 Solyc03g062670.1.1
## 28 28 28
## Solyc03g097790.2.1 Solyc04g017710.2.1 Solyc04g063370.1.1
## 28 28 28
## Solyc05g023950.1.1 Solyc06g030530.2.1 Solyc06g036580.2.1
## 28 28 28
## Solyc06g071040.2.1 Solyc06g074990.1.1 Solyc06g075730.1.1
## 28 28 28
## Solyc08g022170.1.1 Solyc08g066240.2.1 Solyc08g082810.2.1
## 28 28 28
## Solyc09g018060.2.1 Solyc09g066310.2.1 Solyc10g005270.1.1
## 28 28 28
## Solyc11g013620.1.1 Solyc11g040290.1.1 Solyc12g019080.1.1
## 28 28 28
## Solyc12g056020.1.1 Solyc01g008190.2.1 Solyc01g058190.2.1
## 28 29 29
## Solyc01g066890.1.1 Solyc01g087950.2.1 Solyc01g103340.2.1
## 29 29 29
## Solyc01g108880.2.1 Solyc02g032430.1.1 Solyc02g070650.2.1
## 29 29 29
## Solyc02g079450.1.1 Solyc03g006980.2.1 Solyc03g063960.1.1
## 29 29 29
## Solyc03g097940.2.1 Solyc04g012080.1.1 Solyc04g024800.1.1
## 29 29 29
## Solyc04g077650.2.1 Solyc06g064700.1.1 Solyc07g015930.1.1
## 29 29 29
## Solyc07g025520.2.1 Solyc08g074680.2.1 Solyc08g076570.2.1
## 29 29 29
## Solyc08g081960.1.1 Solyc09g065800.2.1 Solyc10g024320.1.1
## 29 29 29
## Solyc11g067230.1.1 Solyc11g071970.1.1 Solyc01g009740.1.1
## 29 29 30
## Solyc01g080300.2.1 Solyc01g087850.2.1 Solyc01g107720.2.1
## 30 30 30
## Solyc02g078150.2.1 Solyc02g088850.2.1 Solyc03g025210.2.1
## 30 30 30
## Solyc03g093710.1.1 Solyc03g113940.2.1 Solyc04g007420.2.1
## 30 30 30
## Solyc04g011790.1.1 Solyc05g008040.2.1 Solyc05g047700.1.1
## 30 30 30
## Solyc06g008450.2.1 Solyc06g048790.1.1 Solyc07g007880.1.1
## 30 30 30
## Solyc07g043710.2.1 Solyc07g056480.2.1 Solyc08g078960.2.1
## 30 30 30
## Solyc09g010830.2.1 Solyc09g015140.2.1 Solyc10g044750.1.1
## 30 30 30
## Solyc10g078880.1.1 Solyc12g040550.1.1 Solyc01g009110.2.1
## 30 30 31
## Solyc02g082540.2.1 Solyc03g026310.2.1 Solyc04g058000.1.1
## 31 31 31
## Solyc05g042010.1.1 Solyc05g050170.1.1 Solyc06g084180.2.1
## 31 31 31
## Solyc08g062540.1.1 Solyc09g074190.1.1 Solyc09g074200.1.1
## 31 31 31
## Solyc10g007370.1.1 Solyc10g008680.1.1 Solyc11g067240.1.1
## 31 31 31
## Solyc12g005430.1.1 Solyc12g009370.1.1 Solyc12g036470.1.1
## 31 31 31
## Solyc01g097220.1.1 Solyc02g062410.1.1 Solyc02g062500.2.1
## 32 32 32
## Solyc02g065700.2.1 Solyc02g071670.2.1 Solyc02g083350.2.1
## 32 32 32
## Solyc02g091220.1.1 Solyc03g006940.1.1 Solyc03g026190.2.1
## 32 32 32
## Solyc03g034020.2.1 Solyc04g049670.2.1 Solyc04g074340.2.1
## 32 32 32
## Solyc05g009070.2.1 Solyc05g012650.2.1 Solyc05g013790.2.1
## 32 32 32
## Solyc05g054650.1.1 Solyc06g076560.1.1 Solyc07g051980.1.1
## 32 32 32
## Solyc07g054770.1.1 Solyc08g005280.1.1 Solyc08g008190.2.1
## 32 32 32
## Solyc09g005380.1.1 Solyc09g014580.2.1 Solyc10g055510.1.1
## 32 32 32
## Solyc12g088500.1.1 Solyc01g014850.2.1 Solyc01g033990.1.1
## 32 33 33
## Solyc01g098350.2.1 Solyc02g005460.1.1 Solyc02g076950.2.1
## 33 33 33
## Solyc03g043830.1.1 Solyc03g093490.2.1 Solyc03g116930.2.1
## 33 33 33
## Solyc04g079470.2.1 Solyc05g041610.1.1 Solyc06g065990.1.1
## 33 33 33
## Solyc07g017290.2.1 Solyc07g061720.2.1 Solyc08g005640.2.1
## 33 33 33
## Solyc10g054820.1.1 Solyc11g045050.1.1 Solyc12g006470.1.1
## 33 33 33
## Solyc12g099030.1.1 Solyc02g077420.2.1 Solyc03g005260.2.1
## 33 34 34
## Solyc03g044960.1.1 Solyc03g115670.1.1 Solyc04g047670.2.1
## 34 34 34
## Solyc05g007120.2.1 Solyc06g059760.2.1 Solyc06g062550.2.1
## 34 34 34
## Solyc06g064720.1.1 Solyc06g064920.1.1 Solyc07g008590.1.1
## 34 34 34
## Solyc07g054750.1.1 Solyc07g061880.1.1 Solyc07g064180.2.1
## 34 34 34
## Solyc08g060870.1.1 Solyc08g065790.2.1 Solyc08g067620.2.1
## 34 34 34
## Solyc10g079300.1.1 Solyc11g050730.1.1 Solyc12g008650.1.1
## 34 34 34
## Solyc01g065490.2.1 Solyc02g061900.1.1 Solyc03g026280.2.1
## 35 35 35
## Solyc03g063220.1.1 Solyc03g116050.1.1 Solyc04g015380.1.1
## 35 35 35
## Solyc04g076700.2.1 Solyc05g005280.2.1 Solyc08g079310.2.1
## 35 35 35
## Solyc10g007360.2.1 Solyc10g011940.1.1 Solyc11g044340.1.1
## 35 35 35
## Solyc11g067330.1.1 Solyc12g099430.1.1 Solyc01g005310.2.1
## 35 35 36
## Solyc01g007980.2.1 Solyc01g102870.1.1 Solyc01g111460.2.1
## 36 36 36
## Solyc02g085880.1.1 Solyc02g089540.2.1 Solyc03g025780.2.1
## 36 36 36
## Solyc04g009290.1.1 Solyc07g008600.1.1 Solyc07g053730.2.1
## 36 36 36
## Solyc08g068610.2.1 Solyc09g014530.2.1 Solyc10g026520.1.1
## 36 36 36
## Solyc10g048100.1.1 Solyc12g042250.1.1 Solyc01g010430.2.1
## 36 36 37
## Solyc01g010440.2.1 Solyc01g044460.1.1 Solyc01g088470.2.1
## 37 37 37
## Solyc01g104510.2.1 Solyc01g109170.2.1 Solyc02g079440.1.1
## 37 37 37
## Solyc02g085700.1.1 Solyc02g086410.1.1 Solyc02g088980.1.1
## 37 37 37
## Solyc02g092680.1.1 Solyc03g065250.2.1 Solyc04g049520.1.1
## 37 37 37
## Solyc04g071800.2.1 Solyc05g053570.2.1 Solyc07g040920.2.1
## 37 37 37
## Solyc07g049550.2.1 Solyc08g080210.2.1 Solyc09g050050.1.1
## 37 37 37
## Solyc09g083210.2.1 Solyc10g049210.1.1 Solyc12g010100.1.1
## 37 37 37
## Solyc12g017610.1.1 Solyc12g049150.1.1 Solyc12g100090.1.1
## 37 37 37
## Solyc01g097450.2.1 Solyc02g063470.1.1 Solyc03g045020.2.1
## 38 38 38
## Solyc03g111940.2.1 Solyc04g005740.1.1 Solyc05g005980.2.1
## 38 38 38
## Solyc06g084100.2.1 Solyc08g068130.1.1 Solyc09g056260.2.1
## 38 38 38
## Solyc10g044490.1.1 Solyc12g011380.1.1 Solyc12g100100.1.1
## 38 38 38
## Solyc01g057520.2.1 Solyc01g067780.1.1 Solyc01g096620.2.1
## 39 39 39
## Solyc01g098020.2.1 Solyc01g100920.2.1 Solyc02g079460.1.1
## 39 39 39
## Solyc03g115390.2.1 Solyc04g064770.1.1 Solyc06g043080.2.1
## 39 39 39
## Solyc06g073750.2.1 Solyc07g008310.2.1 Solyc08g068680.2.1
## 39 39 39
## Solyc11g044370.1.1 Solyc01g007960.2.1 Solyc01g056850.2.1
## 39 40 40
## Solyc01g110330.1.1 Solyc02g069460.2.1 Solyc02g086430.2.1
## 40 40 40
## Solyc04g009900.2.1 Solyc04g014320.1.1 Solyc06g073230.2.1
## 40 40 40
## Solyc09g005870.1.1 Solyc09g064660.2.1 Solyc10g007230.1.1
## 40 40 40
## Solyc10g085280.1.1 Solyc11g017170.1.1 Solyc11g017370.1.1
## 40 40 40
## Solyc11g043150.1.1 Solyc11g065160.1.1 Solyc11g072980.1.1
## 40 40 40
## Solyc12g044780.1.1 Solyc12g094730.1.1 Solyc12g099700.1.1
## 40 40 40
## Solyc01g091100.2.1 Solyc01g111800.2.1 Solyc02g066830.2.1
## 41 41 41
## Solyc03g013140.1.1 Solyc03g083730.1.1 Solyc03g111990.2.1
## 41 41 41
## Solyc03g112600.2.1 Solyc05g012310.2.1 Solyc05g055710.2.1
## 41 41 41
## Solyc06g053950.1.1 Solyc06g073540.2.1 Solyc06g074770.2.1
## 41 41 41
## Solyc07g042790.1.1 Solyc10g009450.1.1 Solyc10g048080.1.1
## 41 41 41
## Solyc11g030570.1.1 Solyc12g019600.1.1 Solyc01g106470.2.1
## 41 41 42
## Solyc01g111680.2.1 Solyc03g097590.2.1 Solyc04g005650.1.1
## 42 42 42
## Solyc04g015470.2.1 Solyc04g074000.2.1 Solyc04g074380.2.1
## 42 42 42
## Solyc04g077180.1.1 Solyc05g008950.2.1 Solyc06g075060.1.1
## 42 42 42
## Solyc07g049240.2.1 Solyc08g077930.2.1 Solyc09g009580.2.1
## 42 42 42
## Solyc09g059490.1.1 Solyc11g008260.1.1 Solyc11g067030.1.1
## 42 42 42
## Solyc01g089920.2.1 Solyc01g105730.1.1 Solyc01g110060.2.1
## 43 43 43
## Solyc02g080840.1.1 Solyc02g082390.1.1 Solyc02g087070.2.1
## 43 43 43
## Solyc03g019980.1.1 Solyc04g049110.1.1 Solyc04g054290.1.1
## 43 43 43
## Solyc05g013300.1.1 Solyc07g051920.1.1 Solyc08g080900.2.1
## 43 43 43
## Solyc12g099350.1.1 Solyc01g006610.1.1 Solyc01g058700.1.1
## 43 44 44
## Solyc01g066100.1.1 Solyc01g091190.2.1 Solyc01g105520.2.1
## 44 44 44
## Solyc02g031910.2.1 Solyc02g077520.2.1 Solyc03g005780.1.1
## 44 44 44
## Solyc05g054540.2.1 Solyc06g082600.2.1 Solyc09g083370.2.1
## 44 44 44
## Solyc12g015910.1.1 Solyc12g088160.1.1 Solyc01g099060.1.1
## 44 44 45
## Solyc03g020060.2.1 Solyc03g078530.1.1 Solyc03g114500.2.1
## 45 45 45
## Solyc04g063440.1.1 Solyc06g051170.2.1 Solyc06g051510.2.1
## 45 45 45
## Solyc07g008570.2.1 Solyc08g062880.1.1 Solyc10g005390.2.1
## 45 45 45
## Solyc11g011350.1.1 Solyc11g013870.1.1 Solyc11g071600.1.1
## 45 45 45
## Solyc01g094260.2.1 Solyc01g102480.2.1 Solyc02g050170.1.1
## 46 46 46
## Solyc02g069900.1.1 Solyc05g012820.1.1 Solyc09g014660.1.1
## 46 46 46
## Solyc12g100190.1.1 Solyc01g011250.1.1 Solyc01g014910.1.1
## 46 47 47
## Solyc01g087290.2.1 Solyc01g109400.2.1 Solyc01g111450.2.1
## 47 47 47
## Solyc02g072010.1.1 Solyc03g060500.1.1 Solyc04g074630.2.1
## 47 47 47
## Solyc06g074160.1.1 Solyc09g010000.2.1 Solyc10g074600.1.1
## 47 47 47
## Solyc11g013730.1.1 Solyc12g036870.1.1 Solyc01g103070.2.1
## 47 47 48
## Solyc02g083640.2.1 Solyc05g047640.2.1 Solyc06g030570.2.1
## 48 48 48
## Solyc08g006750.2.1 Solyc10g080280.1.1 Solyc11g017040.1.1
## 48 48 48
## Solyc12g019110.1.1 Solyc12g098870.1.1 Solyc02g032220.1.1
## 48 48 49
## Solyc02g071060.2.1 Solyc02g083020.1.1 Solyc02g087150.2.1
## 49 49 49
## Solyc03g005950.1.1 Solyc03g063470.1.1 Solyc04g017610.2.1
## 49 49 49
## Solyc04g048980.2.1 Solyc05g050430.1.1 Solyc06g069160.1.1
## 49 49 49
## Solyc06g071980.2.1 Solyc07g051930.1.1 Solyc07g052220.1.1
## 49 49 49
## Solyc08g042030.1.1 Solyc08g079970.1.1 Solyc11g020850.1.1
## 49 49 49
## Solyc12g088090.1.1 Solyc01g098980.2.1 Solyc02g032040.1.1
## 49 50 50
## Solyc03g063980.1.1 Solyc05g009040.2.1 Solyc05g055580.1.1
## 50 50 50
## Solyc06g036750.1.1 Solyc07g054120.1.1 Solyc08g048210.1.1
## 50 50 50
## Solyc08g062980.1.1 Solyc11g012670.1.1 Solyc01g088030.2.1
## 50 50 51
## Solyc02g079550.1.1 Solyc02g080300.2.1 Solyc03g034030.2.1
## 51 51 51
## Solyc03g120560.2.1 Solyc04g074560.1.1 Solyc05g015930.2.1
## 51 51 51
## Solyc07g043660.2.1 Solyc07g061730.2.1 Solyc11g010760.1.1
## 51 51 51
## Solyc12g007210.1.1 Solyc12g049170.1.1 Solyc02g091350.2.1
## 51 51 52
## Solyc03g115280.1.1 Solyc03g123950.2.1 Solyc04g047780.1.1
## 52 52 52
## Solyc04g072830.2.1 Solyc06g051780.2.1 Solyc06g053220.2.1
## 52 52 52
## Solyc07g014640.2.1 Solyc08g022240.1.1 Solyc09g059170.1.1
## 52 52 52
## Solyc11g013890.1.1 Solyc12g038830.1.1 Solyc01g066040.2.1
## 52 52 53
## Solyc01g106140.1.1 Solyc03g034460.2.1 Solyc03g063480.2.1
## 53 53 53
## Solyc03g120670.2.1 Solyc04g010200.1.1 Solyc04g015210.2.1
## 53 53 53
## Solyc05g018200.1.1 Solyc06g009290.2.1 Solyc06g073480.2.1
## 53 53 53
## Solyc07g054540.2.1 Solyc08g074590.2.1 Solyc08g076200.2.1
## 53 53 53
## Solyc09g082240.2.1 Solyc10g084950.1.1 Solyc11g045250.1.1
## 53 53 53
## Solyc11g071540.1.1 Solyc01g079340.2.1 Solyc01g098300.1.1
## 53 54 54
## Solyc02g072040.2.1 Solyc03g006780.2.1 Solyc04g064720.2.1
## 54 54 54
## Solyc09g074280.1.1 Solyc10g079400.1.1 Solyc12g049160.1.1
## 54 54 54
## Solyc01g056210.1.1 Solyc03g093410.2.1 Solyc05g041830.2.1
## 55 55 55
## Solyc05g044510.1.1 Solyc06g083000.1.1 Solyc08g067560.1.1
## 55 55 55
## Solyc09g074980.2.1 Solyc11g006530.1.1 Solyc11g072420.1.1
## 55 55 55
## Solyc12g014530.1.1 Solyc01g091130.2.1 Solyc01g110000.2.1
## 55 56 56
## Solyc01g111230.2.1 Solyc02g071380.2.1 Solyc02g080240.1.1
## 56 56 56
## Solyc02g081370.2.1 Solyc03g112110.1.1 Solyc04g057790.1.1
## 56 56 56
## Solyc05g018280.1.1 Solyc05g052570.2.1 Solyc06g063190.2.1
## 56 56 56
## Solyc08g015840.1.1 Solyc08g075210.1.1 Solyc10g078820.1.1
## 56 56 56
## Solyc10g083890.1.1 Solyc01g107970.1.1 Solyc02g072460.1.1
## 56 57 57
## Solyc06g059720.2.1 Solyc07g040790.2.1 Solyc08g006050.1.1
## 57 57 57
## Solyc10g007430.1.1 Solyc01g081270.2.1 Solyc02g061690.1.1
## 57 58 58
## Solyc04g024880.1.1 Solyc04g052970.1.1 Solyc05g005420.1.1
## 58 58 58
## Solyc05g050910.2.1 Solyc06g053570.2.1 Solyc07g006470.1.1
## 58 58 58
## Solyc07g007840.1.1 Solyc07g032180.2.1 Solyc07g052190.1.1
## 58 58 58
## Solyc08g048140.1.1 Solyc09g007890.1.1 Solyc12g049540.1.1
## 58 58 58
## Solyc12g056110.1.1 Solyc03g033760.1.1 Solyc03g083440.2.1
## 58 59 59
## Solyc08g082230.2.1 Solyc11g013280.1.1 Solyc01g094440.1.1
## 59 59 60
## Solyc01g095260.1.1 Solyc02g092670.1.1 Solyc03g058380.2.1
## 60 60 60
## Solyc03g111460.1.1 Solyc03g117370.2.1 Solyc04g079810.1.1
## 60 60 60
## Solyc04g080870.1.1 Solyc05g006290.1.1 Solyc06g065980.2.1
## 60 60 60
## Solyc07g053230.2.1 Solyc09g007920.2.1 Solyc10g055580.1.1
## 60 60 60
## Solyc11g020260.1.1 Solyc11g040240.1.1 Solyc01g087450.2.1
## 60 60 61
## Solyc02g011680.2.1 Solyc02g063480.2.1 Solyc04g024500.2.1
## 61 61 61
## Solyc05g012020.2.1 Solyc05g013890.1.1 Solyc05g050360.2.1
## 61 61 61
## Solyc06g064470.2.1 Solyc08g065690.1.1 Solyc10g024400.1.1
## 61 61 61
## Solyc11g007730.1.1 Solyc11g045190.1.1 Solyc02g085080.2.1
## 61 61 62
## Solyc02g091730.1.1 Solyc05g052680.1.1 Solyc07g006620.2.1
## 62 62 62
## Solyc07g007770.1.1 Solyc11g044620.1.1 Solyc01g104720.2.1
## 62 62 63
## Solyc01g109200.2.1 Solyc02g083680.1.1 Solyc03g083790.1.1
## 63 63 63
## Solyc08g074300.2.1 Solyc08g075480.2.1 Solyc01g059760.1.1
## 63 63 64
## Solyc08g061240.1.1 Solyc09g005900.2.1 Solyc10g018110.1.1
## 64 64 64
## Solyc10g049370.1.1 Solyc10g079520.1.1 Solyc11g012300.1.1
## 64 64 64
## Solyc06g062560.1.1 Solyc09g092380.2.1 Solyc10g076500.1.1
## 65 65 65
## Solyc01g079550.2.1 Solyc01g111010.2.1 Solyc03g111500.2.1
## 66 66 66
## Solyc07g052540.2.1 Solyc10g084200.1.1 Solyc11g007290.1.1
## 66 66 66
## Solyc11g011310.1.1 Solyc12g097010.1.1 Solyc01g010340.1.1
## 66 66 67
## Solyc01g098690.2.1 Solyc01g104100.2.1 Solyc01g111260.2.1
## 67 67 67
## Solyc07g021330.1.1 Solyc07g064380.2.1 Solyc09g013100.2.1
## 67 67 67
## Solyc01g073980.1.1 Solyc01g110900.1.1 Solyc02g062320.2.1
## 68 68 68
## Solyc03g093550.1.1 Solyc03g111770.2.1 Solyc03g118110.2.1
## 68 68 68
## Solyc04g051790.1.1 Solyc06g072940.1.1 Solyc08g036500.1.1
## 68 68 68
## Solyc01g108810.2.1 Solyc02g014740.1.1 Solyc02g082410.2.1
## 69 69 69
## Solyc05g009750.1.1 Solyc06g005920.1.1 Solyc06g082560.1.1
## 69 69 69
## Solyc07g016020.1.1 Solyc10g083830.1.1 Solyc11g056410.1.1
## 69 69 69
## Solyc12g008340.1.1 Solyc12g038430.1.1 Solyc12g096740.1.1
## 69 69 69
## Solyc01g110930.1.1 Solyc02g081480.2.1 Solyc07g042950.1.1
## 70 70 70
## Solyc11g010230.1.1 Solyc11g028070.1.1 Solyc01g110030.2.1
## 70 70 71
## Solyc04g074390.2.1 Solyc05g023700.1.1 Solyc05g050960.2.1
## 71 71 71
## Solyc06g053870.2.1 Solyc01g096980.1.1 Solyc03g006350.2.1
## 71 72 72
## Solyc07g006930.1.1 Solyc09g065690.2.1 Solyc12g057080.1.1
## 72 72 72
## Solyc01g094740.1.1 Solyc01g111480.1.1 Solyc02g043860.2.1
## 73 73 73
## Solyc03g083170.2.1 Solyc07g006250.2.1 Solyc10g047840.1.1
## 73 73 73
## Solyc11g032040.1.1 Solyc12g021200.1.1 Solyc01g016850.1.1
## 73 73 74
## Solyc01g101180.2.1 Solyc01g111120.2.1 Solyc02g065350.2.1
## 74 74 74
## Solyc02g070110.1.1 Solyc04g081130.1.1 Solyc09g083100.1.1
## 74 74 74
## Solyc11g013830.1.1 Solyc12g040520.1.1 Solyc01g066290.2.1
## 74 74 75
## Solyc01g079060.2.1 Solyc02g068600.2.1 Solyc06g005890.2.1
## 75 75 75
## Solyc06g011550.2.1 Solyc06g063200.1.1 Solyc07g054900.2.1
## 75 75 75
## Solyc08g061850.2.1 Solyc10g050530.1.1 Solyc10g078230.1.1
## 75 75 75
## Solyc03g098310.1.1 Solyc04g077030.2.1 Solyc09g008480.2.1
## 76 76 76
## Solyc09g089970.1.1 Solyc10g086320.1.1 Solyc02g032960.2.1
## 76 76 77
## Solyc03g112040.1.1 Solyc04g049900.1.1 Solyc04g082010.1.1
## 77 77 77
## Solyc05g025740.2.1 Solyc06g065360.2.1 Solyc07g025210.1.1
## 77 77 77
## Solyc08g074620.1.1 Solyc10g037940.1.1 Solyc12g008550.1.1
## 77 77 77
## Solyc01g009260.1.1 Solyc01g111070.2.1 Solyc02g078060.1.1
## 78 78 78
## Solyc02g082000.2.1 Solyc03g098400.1.1 Solyc03g112030.1.1
## 78 78 78
## Solyc07g043390.2.1 Solyc07g049190.2.1 Solyc11g011850.1.1
## 78 78 78
## Solyc01g099520.2.1 Solyc02g067100.2.1 Solyc02g070320.2.1
## 79 79 79
## Solyc02g080070.2.1 Solyc05g053600.2.1 Solyc06g069670.2.1
## 79 79 79
## Solyc07g061710.1.1 Solyc09g007910.2.1 Solyc02g062810.2.1
## 79 79 80
## Solyc02g070060.1.1 Solyc03g095240.2.1 Solyc04g080320.1.1
## 80 80 80
## Solyc07g008550.2.1 Solyc07g008630.1.1 Solyc08g005820.1.1
## 80 80 80
## Solyc08g021910.1.1 Solyc09g030430.1.1 Solyc10g049800.1.1
## 80 80 80
## Solyc12g088050.1.1 Solyc04g079640.2.1 Solyc07g008920.2.1
## 80 81 81
## Solyc01g056620.2.1 Solyc01g060080.2.1 Solyc01g088300.2.1
## 82 82 82
## Solyc02g032450.2.1 Solyc02g086280.2.1 Solyc03g120550.2.1
## 82 82 82
## Solyc06g064730.1.1 Solyc08g068770.1.1 Solyc09g092640.2.1
## 82 82 82
## Solyc10g054790.1.1 Solyc11g067140.1.1 Solyc02g030110.2.1
## 82 82 83
## Solyc02g084790.2.1 Solyc05g018620.2.1 Solyc06g071150.2.1
## 83 83 83
## Solyc07g006050.1.1 Solyc10g018960.1.1 Solyc01g090080.1.1
## 83 83 84
## Solyc03g078770.2.1 Solyc06g075940.1.1 Solyc06g083800.2.1
## 84 84 84
## Solyc07g054610.2.1 Solyc02g080750.1.1 Solyc02g094540.2.1
## 84 85 85
## Solyc04g079660.2.1 Solyc05g010640.2.1 Solyc06g054120.1.1
## 85 85 85
## Solyc08g036480.1.1 Solyc11g010990.1.1 Solyc01g107680.2.1
## 85 85 86
## Solyc03g097570.2.1 Solyc03g124010.2.1 Solyc02g064870.1.1
## 86 86 87
## Solyc08g013970.1.1 Solyc08g080700.1.1 Solyc01g101190.2.1
## 87 87 88
## Solyc10g044550.1.1 Solyc12g033060.1.1 Solyc08g014110.1.1
## 88 88 90
## Solyc10g084590.2.1 Solyc12g049240.1.1 Solyc02g062860.2.1
## 90 90 91
## Solyc05g013870.2.1 Solyc08g062250.1.1 Solyc08g062650.2.1
## 91 91 91
## Solyc02g062290.2.1 Solyc02g094610.1.1 Solyc04g078440.2.1
## 92 92 92
## Solyc06g054670.1.1 Solyc09g092310.1.1 Solyc12g088520.1.1
## 92 92 92
## Solyc02g084640.2.1 Solyc02g086110.2.1 Solyc03g026330.2.1
## 93 93 93
## Solyc05g005590.2.1 Solyc05g009760.1.1 Solyc08g075600.1.1
## 93 93 93
## Solyc12g021340.1.1 Solyc01g097390.2.1 Solyc07g042630.2.1
## 93 94 94
## Solyc09g009370.2.1 Solyc01g111210.2.1 Solyc04g054800.2.1
## 94 95 95
## Solyc07g020930.1.1 Solyc11g013480.1.1 Solyc03g113880.2.1
## 95 95 96
## Solyc04g051610.2.1 Solyc05g055590.1.1 Solyc12g096770.1.1
## 96 96 96
## Solyc04g055140.1.1 Solyc08g013800.2.1 Solyc09g005030.1.1
## 97 97 97
## Solyc09g008720.1.1 Solyc11g008530.1.1 Solyc01g015050.1.1
## 97 97 98
## Solyc06g076640.2.1 Solyc10g076590.1.1 Solyc11g072320.1.1
## 98 98 98
## Solyc01g098370.1.1 Solyc02g068940.1.1 Solyc04g049380.2.1
## 99 99 99
## Solyc10g045410.1.1 Solyc12g070170.1.1 Solyc01g103720.2.1
## 99 99 100
## Solyc01g108280.2.1 Solyc02g080220.2.1 Solyc08g077500.2.1
## 100 100 100
## Solyc09g066370.1.1 Solyc10g008180.1.1 Solyc07g051890.1.1
## 100 100 101
## Solyc09g082840.1.1 Solyc09g091180.2.1 Solyc12g100080.1.1
## 101 101 101
## Solyc02g063360.2.1 Solyc07g008080.2.1 Solyc09g018430.2.1
## 102 102 102
## Solyc03g093760.1.1 Solyc03g095680.1.1 Solyc04g010130.1.1
## 103 103 103
## Solyc07g022790.2.1 Solyc11g010740.1.1 Solyc03g025600.2.1
## 103 103 104
## Solyc03g061600.2.1 Solyc03g078810.2.1 Solyc04g024990.1.1
## 104 104 104
## Solyc04g076310.2.1 Solyc04g077090.1.1 Solyc10g079600.1.1
## 104 104 104
## Solyc01g104480.2.1 Solyc04g058030.1.1 Solyc03g098540.1.1
## 105 105 106
## Solyc07g055380.1.1 Solyc07g056470.2.1 Solyc10g074440.1.1
## 106 106 106
## Solyc11g072860.1.1 Solyc03g006450.1.1 Solyc03g111210.2.1
## 106 107 107
## Solyc04g051410.2.1 Solyc10g006260.2.1 Solyc12g005100.1.1
## 107 107 107
## Solyc10g018630.1.1 Solyc02g084360.2.1 Solyc03g111930.2.1
## 108 109 109
## Solyc05g008760.2.1 Solyc11g042900.1.1 Solyc01g088060.2.1
## 109 109 110
## Solyc01g111080.2.1 Solyc11g006630.1.1 Solyc01g006350.2.1
## 110 110 111
## Solyc03g007950.2.1 Solyc07g018110.1.1 Solyc01g111000.2.1
## 111 111 112
## Solyc02g081740.1.1 Solyc07g009430.1.1 Solyc09g005590.2.1
## 112 112 112
## Solyc11g005830.1.1 Solyc12g005480.1.1 Solyc01g011480.1.1
## 112 112 113
## Solyc03g053080.1.1 Solyc06g075420.1.1 Solyc10g055810.1.1
## 113 113 113
## Solyc12g035850.1.1 Solyc12g096170.1.1 Solyc01g108700.2.1
## 113 113 114
## Solyc04g072330.1.1 Solyc06g082240.2.1 Solyc07g043630.1.1
## 114 114 114
## Solyc09g092710.2.1 Solyc12g043070.1.1 Solyc01g087010.2.1
## 114 114 115
## Solyc01g094210.2.1 Solyc03g122170.2.1 Solyc05g005900.2.1
## 115 115 115
## Solyc11g020770.1.1 Solyc01g087300.2.1 Solyc01g100160.2.1
## 115 116 116
## Solyc12g077430.1.1 Solyc09g072640.2.1 Solyc03g082770.1.1
## 116 117 118
## Solyc03g096700.1.1 Solyc01g106920.2.1 Solyc02g032140.1.1
## 118 119 119
## Solyc08g044300.1.1 Solyc08g065750.1.1 Solyc10g051140.1.1
## 119 119 119
## Solyc12g038530.1.1 Solyc05g014540.2.1 Solyc10g055270.1.1
## 119 120 120
## Solyc11g012340.1.1 Solyc12g042630.1.1 Solyc12g039010.1.1
## 120 121 122
## Solyc01g059910.2.1 Solyc02g077170.1.1 Solyc02g084180.1.1
## 123 123 123
## Solyc06g075440.1.1 Solyc11g020660.1.1 Solyc04g009860.2.1
## 123 123 124
## Solyc04g072480.2.1 Solyc09g005480.2.1 Solyc09g011960.1.1
## 124 124 124
## Solyc11g020020.1.1 Solyc11g071480.1.1 Solyc01g010460.2.1
## 124 124 125
## Solyc01g103910.1.1 Solyc01g109040.2.1 Solyc04g008120.1.1
## 125 125 125
## Solyc09g018690.2.1 Solyc05g052670.1.1 Solyc06g008090.2.1
## 125 126 126
## Solyc04g058110.2.1 Solyc06g064750.1.1 Solyc08g065500.1.1
## 127 127 127
## Solyc09g089760.1.1 Solyc12g070270.1.1 Solyc01g017490.1.1
## 128 128 129
## Solyc02g071100.2.1 Solyc08g007390.2.1 Solyc01g103200.2.1
## 129 129 130
## Solyc12g089370.1.1 Solyc07g009580.1.1 Solyc08g008670.2.1
## 130 131 131
## Solyc08g066010.2.1 Solyc01g068610.2.1 Solyc01g106620.2.1
## 131 132 132
## Solyc02g088780.2.1 Solyc04g055240.1.1 Solyc08g068120.1.1
## 132 132 132
## Solyc02g089840.2.1 Solyc06g065870.2.1 Solyc02g021700.2.1
## 134 135 136
## Solyc02g088870.1.1 Solyc05g014090.1.1 Solyc08g068690.1.1
## 136 136 136
## Solyc11g042470.1.1 Solyc01g103740.2.1 Solyc11g066550.1.1
## 136 137 137
## Solyc01g007000.2.1 Solyc05g011940.2.1 Solyc05g026330.1.1
## 138 138 138
## Solyc10g052690.1.1 Solyc11g018520.1.1 Solyc01g102580.2.1
## 138 138 139
## Solyc03g111280.1.1 Solyc08g076770.2.1 Solyc10g049400.1.1
## 139 139 139
## Solyc04g076710.2.1 Solyc08g074460.1.1 Solyc12g008900.1.1
## 140 140 140
## Solyc11g033250.1.1 Solyc01g017930.1.1 Solyc04g017890.1.1
## 141 142 142
## Solyc05g008750.2.1 Solyc07g062500.2.1 Solyc02g080390.2.1
## 143 143 144
## Solyc05g018330.1.1 Solyc07g045410.1.1 Solyc09g055970.1.1
## 144 144 144
## Solyc01g111200.2.1 Solyc07g051880.1.1 Solyc10g085340.1.1
## 145 145 145
## Solyc12g038130.1.1 Solyc01g010720.2.1 Solyc03g007850.1.1
## 145 146 146
## Solyc05g041580.1.1 Solyc02g032720.1.1 Solyc02g081770.1.1
## 146 147 147
## Solyc08g067210.2.1 Solyc03g118710.2.1 Solyc09g055390.1.1
## 147 148 148
## Solyc05g005360.1.1 Solyc11g063610.1.1 Solyc04g052960.1.1
## 149 149 150
## Solyc10g079670.1.1 Solyc01g007890.1.1 Solyc09g082690.2.1
## 150 151 151
## Solyc01g097700.1.1 Solyc04g009110.1.1 Solyc02g086990.2.1
## 152 152 153
## Solyc03g122350.2.1 Solyc11g011620.1.1 Solyc08g066320.2.1
## 153 153 154
## Solyc11g056330.1.1 Solyc02g076750.1.1 Solyc06g071870.2.1
## 155 156 156
## Solyc03g094080.2.1 Solyc04g049760.2.1 Solyc01g110800.2.1
## 157 157 158
## Solyc03g051930.2.1 Solyc06g068190.1.1 Solyc01g006410.2.1
## 158 158 159
## Solyc02g081360.2.1 Solyc02g085950.2.1 Solyc02g089850.2.1
## 159 160 160
## Solyc05g054340.2.1 Solyc03g093280.1.1 Solyc11g007030.1.1
## 160 161 161
## Solyc11g045160.1.1 Solyc02g088270.2.1 Solyc03g053010.2.1
## 161 162 162
## Solyc07g055440.1.1 Solyc02g071030.1.1 Solyc07g062230.2.1
## 162 163 163
## Solyc01g110890.1.1 Solyc03g025250.2.1 Solyc09g074130.1.1
## 164 164 164
## Solyc12g010950.1.1 Solyc08g079010.1.1 Solyc11g005520.1.1
## 164 165 165
## Solyc02g084520.2.1 Solyc04g005850.1.1 Solyc07g026960.2.1
## 166 166 166
## Solyc07g063730.1.1 Solyc03g083130.1.1 Solyc01g105740.1.1
## 166 167 168
## Solyc02g038650.1.1 Solyc02g062480.1.1 Solyc09g005090.1.1
## 168 168 168
## Solyc09g015020.1.1 Solyc01g008360.2.1 Solyc05g007540.1.1
## 168 169 169
## Solyc01g008290.2.1 Solyc11g069310.1.1 Solyc05g007630.2.1
## 170 170 171
## Solyc01g099730.2.1 Solyc08g065570.1.1 Solyc08g067870.1.1
## 172 172 172
## Solyc12g098840.1.1 Solyc06g070920.2.1 Solyc07g017710.1.1
## 172 173 174
## Solyc10g009540.1.1 Solyc10g080380.1.1 Solyc01g068340.2.1
## 174 174 175
## Solyc01g090260.2.1 Solyc01g091300.2.1 Solyc01g102540.2.1
## 175 175 175
## Solyc01g108820.1.1 Solyc06g073530.1.1 Solyc12g088620.1.1
## 175 175 175
## Solyc04g050380.1.1 Solyc06g075490.1.1 Solyc08g065250.2.1
## 176 176 176
## Solyc10g007460.2.1 Solyc01g049820.2.1 Solyc01g091050.2.1
## 178 180 180
## Solyc11g008540.1.1 Solyc11g012810.1.1 Solyc03g070400.1.1
## 180 180 181
## Solyc01g107300.2.1 Solyc01g005880.1.1 Solyc03g118930.2.1
## 183 184 184
## Solyc10g083280.1.1 Solyc08g068780.1.1 Solyc09g098470.1.1
## 184 185 185
## Solyc10g078490.1.1 Solyc12g076350.1.1 Solyc07g017700.1.1
## 185 185 186
## Solyc08g006740.2.1 Solyc09g066030.1.1 Solyc06g068060.2.1
## 186 186 188
## Solyc10g076970.1.1 Solyc01g100680.1.1 Solyc05g015220.2.1
## 188 189 189
## Solyc08g063010.2.1 Solyc08g066570.1.1 Solyc01g080100.2.1
## 189 189 190
## Solyc08g083120.2.1 Solyc03g044790.2.1 Solyc10g085240.1.1
## 190 191 191
## Solyc12g089310.1.1 Solyc01g111130.2.1 Solyc04g076140.2.1
## 191 192 192
## Solyc01g087840.2.1 Solyc02g036340.2.1 Solyc04g014590.1.1
## 193 194 194
## Solyc05g010440.1.1 Solyc05g015920.2.1 Solyc01g044480.2.1
## 194 194 195
## Solyc04g024420.2.1 Solyc05g012890.1.1 Solyc12g089300.1.1
## 195 195 196
## Solyc02g066890.1.1 Solyc09g009870.2.1 Solyc12g096450.1.1
## 197 197 197
## Solyc03g063410.1.1 Solyc08g078710.1.1 Solyc01g090330.1.1
## 198 198 199
## Solyc03g031730.2.1 Solyc09g005540.1.1 Solyc03g019920.1.1
## 199 199 201
## Solyc01g011200.2.1 Solyc01g109160.2.1 Solyc03g114540.1.1
## 202 202 202
## Solyc01g080740.1.1 Solyc03g034130.2.1 Solyc03g122050.1.1
## 203 203 203
## Solyc05g052530.1.1 Solyc12g009780.1.1 Solyc02g077210.1.1
## 204 204 205
## Solyc01g106770.2.1 Solyc03g006730.1.1 Solyc04g078720.1.1
## 207 207 207
## Solyc06g059710.2.1 Solyc02g092030.1.1 Solyc05g046140.2.1
## 207 208 209
## Solyc05g010780.1.1 Solyc01g057040.2.1 Solyc01g110860.1.1
## 211 212 213
## Solyc06g064960.2.1 Solyc12g019020.1.1 Solyc01g106120.2.1
## 213 213 214
## Solyc04g010210.1.1 Solyc04g076540.2.1 Solyc04g079030.2.1
## 214 215 215
## Solyc01g108460.1.1 Solyc04g028470.1.1 Solyc06g054340.1.1
## 216 216 217
## Solyc08g065650.1.1 Solyc01g112370.2.1 Solyc01g106910.2.1
## 218 220 221
## Solyc03g033360.1.1 Solyc12g062720.1.1 Solyc05g043350.2.1
## 221 221 222
## Solyc06g068430.2.1 Solyc06g074100.1.1 Solyc06g076210.1.1
## 222 223 223
## Solyc06g051390.2.1 Solyc12g009690.1.1 Solyc02g030130.2.1
## 224 226 227
## Solyc01g095320.2.1 Solyc03g115300.1.1 Solyc11g005040.1.1
## 228 228 229
## Solyc02g081100.1.1 Solyc02g092350.2.1 Solyc01g006040.2.1
## 230 231 234
## Solyc07g018100.2.1 Solyc01g016540.1.1 Solyc03g119240.2.1
## 234 235 236
## Solyc03g031430.1.1 Solyc06g065150.1.1 Solyc02g086070.2.1
## 237 237 238
## Solyc05g007250.2.1 Solyc01g007250.2.1 Solyc07g008500.1.1
## 238 239 239
## Solyc11g006640.1.1 Solyc10g074610.1.1 Solyc07g056610.1.1
## 239 240 241
## Solyc08g075630.2.1 Solyc01g110940.2.1 Solyc05g014380.2.1
## 241 242 243
## Solyc04g076440.1.1 Solyc01g106810.2.1 Solyc02g085860.2.1
## 244 245 247
## Solyc01g111150.2.1 Solyc03g043650.1.1 Solyc01g110080.1.1
## 248 248 249
## Solyc09g075940.2.1 Solyc10g006610.2.1 Solyc11g011070.1.1
## 249 249 249
## Solyc09g064470.2.1 Solyc06g074870.1.1 Solyc08g061810.2.1
## 251 252 252
## Solyc04g050150.2.1 Solyc05g043210.1.1 Solyc03g114260.1.1
## 253 253 254
## Solyc12g049090.1.1 Solyc02g014550.1.1 Solyc03g026130.2.1
## 254 255 255
## Solyc01g008540.2.1 Solyc07g041510.1.1 Solyc09g075930.1.1
## 256 256 256
## Solyc11g013070.1.1 Solyc02g011690.1.1 Solyc03g111290.1.1
## 256 258 258
## Solyc09g092020.2.1 Solyc01g097000.2.1 Solyc01g111170.2.1
## 258 260 260
## Solyc03g063280.2.1 Solyc08g077610.1.1 Solyc10g044980.1.1
## 260 260 260
## Solyc04g005190.2.1 Solyc05g055110.2.1 Solyc12g035500.1.1
## 261 261 261
## Solyc06g007300.1.1 Solyc11g007990.1.1 Solyc07g021460.1.1
## 263 263 264
## Solyc06g066520.1.1 Solyc07g042800.2.1 Solyc02g094700.1.1
## 267 267 269
## Solyc05g026480.1.1 Solyc06g074450.1.1 Solyc09g009320.1.1
## 270 270 271
## Solyc09g064390.2.1 Solyc12g055780.1.1 Solyc01g034210.1.1
## 271 273 275
## Solyc01g112300.2.1 Solyc11g069620.1.1 Solyc06g050610.1.1
## 277 277 278
## Solyc09g064310.2.1 Solyc05g054020.1.1 Solyc10g007240.1.1
## 278 279 279
## Solyc01g081080.1.1 Solyc02g031860.2.1 Solyc03g122290.2.1
## 284 285 285
## Solyc05g026520.1.1 Solyc06g048710.1.1 Solyc01g009690.1.1
## 287 288 289
## Solyc02g092020.1.1 Solyc10g074430.1.1 Solyc09g090610.2.1
## 289 289 290
## Solyc01g099740.2.1 Solyc08g080450.1.1 Solyc01g112310.2.1
## 292 292 293
## Solyc01g110880.1.1 Solyc05g009000.2.1 Solyc06g084240.1.1
## 294 294 295
## Solyc01g009830.2.1 Solyc01g111020.2.1 Solyc01g111040.2.1
## 296 296 297
## Solyc04g005700.2.1 Solyc11g008470.1.1 Solyc08g068010.1.1
## 299 303 304
## Solyc11g050710.1.1 Solyc01g091040.2.1 Solyc01g110920.2.1
## 305 306 306
## Solyc04g039990.2.1 Solyc06g042950.2.1 Solyc11g071620.1.1
## 306 307 310
## Solyc09g083250.2.1 Solyc12g049070.1.1 Solyc12g009870.1.1
## 311 311 312
## Solyc12g056730.1.1 Solyc09g015830.1.1 Solyc05g052810.2.1
## 315 316 318
## Solyc06g010200.2.1 Solyc02g079610.2.1 Solyc02g092310.2.1
## 323 326 326
## Solyc05g006170.2.1 Solyc09g065080.1.1 Solyc05g014020.1.1
## 326 328 329
## Solyc11g065470.1.1 Solyc01g008860.1.1 Solyc02g089340.2.1
## 330 331 331
## Solyc07g037940.1.1 Solyc08g061500.1.1 Solyc05g014100.1.1
## 336 337 338
## Solyc10g081070.1.1 Solyc06g064630.2.1 Solyc12g049430.1.1
## 338 339 339
## Solyc02g084500.2.1 Solyc01g112350.2.1 Solyc11g071430.1.1
## 340 341 341
## Solyc01g067220.1.1 Solyc03g111810.2.1 Solyc12g098780.1.1
## 342 342 342
## Solyc06g064980.2.1 Solyc01g091110.2.1 Solyc05g012360.2.1
## 345 346 346
## Solyc07g051870.1.1 Solyc01g091020.2.1 Solyc08g083450.1.1
## 350 351 351
## Solyc10g083750.1.1 Solyc12g019270.1.1 Solyc08g065590.1.1
## 353 356 358
## Solyc01g106800.2.1 Solyc04g076910.2.1 Solyc01g087790.2.1
## 359 361 363
## Solyc03g111570.2.1 Solyc11g005840.1.1 Solyc01g095940.2.1
## 363 363 365
## Solyc03g119880.2.1 Solyc07g009510.1.1 Solyc12g056710.1.1
## 367 370 370
## Solyc03g020000.2.1 Solyc12g010610.1.1 Solyc06g061210.2.1
## 371 374 377
## Solyc01g111110.2.1 Solyc04g076450.1.1 Solyc04g071270.1.1
## 380 381 382
## Solyc07g065430.2.1 Solyc02g089050.2.1 Solyc09g005450.1.1
## 382 385 386
## Solyc10g085390.1.1 Solyc11g066990.1.1 Solyc01g086940.2.1
## 387 388 390
## Solyc07g066010.2.1 Solyc01g110020.2.1 Solyc05g056070.2.1
## 395 403 403
## Solyc08g006200.1.1 Solyc08g015710.1.1 Solyc01g065910.1.1
## 408 408 409
## Solyc02g071240.2.1 Solyc04g056410.2.1 Solyc07g032320.1.1
## 412 412 414
## Solyc05g055550.2.1 Solyc07g064170.2.1 Solyc10g051100.1.1
## 416 416 418
## Solyc07g041330.1.1 Solyc01g056280.2.1 Solyc08g006260.1.1
## 419 421 424
## Solyc12g027580.1.1 Solyc07g062760.1.1 Solyc11g022400.1.1
## 426 429 433
## Solyc06g075870.1.1 Solyc02g080010.2.1 Solyc12g005900.1.1
## 434 437 440
## Solyc07g063710.1.1 Solyc11g012220.1.1 Solyc07g005480.2.1
## 445 446 452
## Solyc02g050260.2.1 Solyc05g016440.2.1 Solyc02g068820.1.1
## 453 456 457
## Solyc03g117920.1.1 Solyc06g071620.2.1 Solyc10g007160.1.1
## 459 460 460
## Solyc04g076990.2.1 Solyc05g005550.2.1 Solyc05g055820.2.1
## 466 467 470
## Solyc09g057920.2.1 Solyc02g067780.2.1 Solyc06g006040.1.1
## 470 471 471
## Solyc01g091810.1.1 Solyc05g005960.2.1 Solyc04g082420.2.1
## 472 472 473
## Solyc07g051960.1.1 Solyc11g013320.1.1 Solyc03g116440.1.1
## 473 473 474
## Solyc12g094410.1.1 Solyc02g079850.2.1 Solyc02g077530.1.1
## 474 477 480
## Solyc02g055460.1.1 Solyc07g054920.1.1 Solyc02g080120.1.1
## 482 482 485
## Solyc03g093250.1.1 Solyc12g027800.1.1 Solyc04g015720.1.1
## 485 486 491
## Solyc06g048450.2.1 Solyc02g011990.1.1 Solyc04g011960.1.1
## 491 496 505
## Solyc01g088020.2.1 Solyc07g009180.1.1 Solyc08g006230.2.1
## 506 510 513
## Solyc12g062480.1.1 Solyc09g074750.2.1 Solyc01g087310.2.1
## 515 532 533
## Solyc02g088140.1.1 Solyc01g096990.2.1 Solyc06g009970.2.1
## 533 534 535
## Solyc06g059930.2.1 Solyc07g018350.2.1 Solyc10g009590.2.1
## 541 542 543
## Solyc09g018370.2.1 Solyc09g091990.2.1 Solyc07g065790.2.1
## 552 554 567
## Solyc01g111950.2.1 Solyc07g066140.1.1 Solyc11g043130.1.1
## 568 572 572
## Solyc02g093380.1.1 Solyc07g042970.2.1 Solyc05g023840.1.1
## 576 576 581
## Solyc11g039870.1.1 Solyc10g006480.1.1 Solyc02g090140.1.1
## 581 585 587
## Solyc09g074690.2.1 Solyc03g116830.2.1 Solyc01g100310.2.1
## 594 597 608
## Solyc01g058160.2.1 Solyc08g075670.1.1 Solyc05g010100.2.1
## 619 628 631
## Solyc08g007600.1.1 Solyc06g082040.1.1 Solyc08g065710.1.1
## 637 640 646
## Solyc01g110820.2.1 Solyc06g062750.2.1 Solyc12g038590.1.1
## 659 660 660
## Solyc02g070750.1.1 Solyc01g110770.2.1 Solyc07g054630.2.1
## 662 667 673
## Solyc01g111140.2.1 Solyc01g091060.1.1 Solyc01g105590.2.1
## 678 681 681
## Solyc04g049580.2.1 Solyc11g008050.1.1 Solyc06g010090.1.1
## 686 691 693
## Solyc03g112950.2.1 Solyc03g110890.1.1 Solyc04g026280.2.1
## 694 695 695
## Solyc11g044250.1.1 Solyc12g096800.1.1 Solyc12g041960.1.1
## 697 697 706
## Solyc08g077140.1.1 Solyc08g066120.2.1 Solyc04g051570.2.1
## 714 719 722
## Solyc09g005330.2.1 Solyc12g021190.1.1 Solyc01g111220.2.1
## 723 723 726
## Solyc08g080810.1.1 Solyc03g116940.1.1 Solyc11g044960.1.1
## 734 737 777
## Solyc04g014430.1.1 Solyc01g106780.2.1 Solyc12g013600.1.1
## 789 812 819
## Solyc02g093200.2.1 Solyc07g053120.2.1 Solyc02g091770.1.1
## 838 841 849
## Solyc02g068780.2.1 Solyc01g091070.2.1 Solyc02g086340.2.1
## 858 876 885
## Solyc09g098250.2.1 Solyc05g050630.2.1 Solyc07g005800.2.1
## 908 941 948
## Solyc02g087170.2.1 Solyc04g028560.2.1 Solyc01g014520.1.1
## 963 973 975
## Solyc02g036270.2.1 Solyc06g049100.2.1 Solyc10g084320.1.1
## 976 979 983
## Solyc01g091120.2.1 Solyc01g058010.2.1 Solyc01g091080.2.1
## 990 996 1042
## Solyc05g014730.1.1 Solyc04g008310.1.1 Solyc03g093850.1.1
## 1082 1085 1111
## Solyc03g006550.2.1 Solyc01g111030.1.1 Solyc08g074740.2.1
## 1116 1120 1123
## Solyc01g097930.2.1 Solyc01g111060.2.1 Solyc07g018000.2.1
## 1167 1176 1183
## Solyc07g043640.2.1 Solyc01g106980.1.1 Solyc08g005860.2.1
## 1190 1274 1307
## Solyc03g097290.2.1 Solyc10g084140.1.1 Solyc01g094060.2.1
## 1317 1325 1328
## Solyc12g013680.1.1 Solyc01g005760.2.1 Solyc08g016050.2.1
## 1382 1391 1392
## Solyc01g105830.2.1 Solyc02g014190.2.1 Solyc02g079630.1.1
## 1412 1540 1548
## Solyc03g058550.1.1 Solyc01g110960.2.1 Solyc07g043620.2.1
## 1563 1830 1950
## Solyc04g049930.2.1 Solyc01g110010.2.1 Solyc01g111050.2.1
## 2147 2393 2502
## Solyc05g054880.2.1 Solyc04g076510.2.1 Solyc01g060040.2.1
## 2883 2942 2972
## Solyc04g050520.2.1 Solyc01g088170.2.1
## 3713 92725 examples of genes with mismapping
- Solyc02g090930.2.1 (12): Tandem Repeat with Solyc02g090940.2.1
- Solyc04g072480.2.1 (30): Nothing obviously strange
- Solyc03g051930.2.1 (70): PEN gene spans two LYC genes
- Solyc02g079850.2.1 (150): PEN gene spans two LYC genes
- Solyc01g110960.2.1 (497): Much Confusion
5 examples of genes with zero mapping
## lyc.id count.known gene.length.ratio.pen.lyc
## 56 Solyc00g014800.1 209 0.8963415
## 81 Solyc00g039290.1 3 0.5263158
## 82 Solyc00g042130.1 641 0.7219858
## 110 Solyc00g097260.1 1 0.7368421
## 112 Solyc00g099160.1 111 1.0512821
## 146 Solyc00g269810.1 13 1.1600000
## 149 Solyc00g304030.1 271 0.8714154
## 267 Solyc01g006410.2 196 0.7125749
## 334 Solyc01g007220.2 243 1.0000000
## 549 Solyc01g010460.2 125 0.2624672
## 585 Solyc01g011150.1 665 0.9316770
## 603 Solyc01g014740.1 1 0.9662921
## 623 Solyc01g017870.1 51 1.0000000
## 635 Solyc01g021700.1 750 0.7780679
## 646 Solyc01g028930.2 231 0.9460784
## 672 Solyc01g056280.2 875 0.9707447
## 711 Solyc01g057890.1 144 0.8735632
## 753 Solyc01g060020.2 456 1.0000000
## 803 Solyc01g066420.2 16 1.0000000
## 1184 Solyc01g081580.1 59 1.1300813
## 1311 Solyc01g088470.2 64 0.6506849
## 2018 Solyc01g100100.2 47 1.0441176
## 2403 Solyc01g106240.2 786 1.0015987
## 2404 Solyc01g106250.2 1715 0.9643917
## 2439 Solyc01g106660.1 352 0.8213925
## 2752 Solyc01g110750.2 250 1.2406015
## 2756 Solyc01g110860.1 71 0.9901961
## 2806 Solyc01g111480.1 734 0.2129514
## 2924 Solyc02g014520.2 59 0.7622378
## 3007 Solyc02g030630.1 19 1.2508143
## 3058 Solyc02g036230.1 3 0.8791209
## 3234 Solyc02g064620.2 107 0.3187773
## 3613 Solyc02g070650.2 45 1.0000000
## 4139 Solyc02g081560.1 5 1.0447761
## 4356 Solyc02g084360.2 109 1.0000000
## 4841 Solyc02g090590.1 3 0.8674699
## 5062 Solyc02g093250.2 1 1.0000000
## 5236 Solyc03g005560.1 239 0.9962193
## 5811 Solyc03g046170.1 42 0.6637931
## 5897 Solyc03g062850.1 229 1.0626058
## 5933 Solyc03g063820.1 62 0.9889706
## 5939 Solyc03g063980.1 132 0.8737374
## 5982 Solyc03g078340.1 44 0.7068966
## 6283 Solyc03g096140.1 305 1.0000000
## 6284 Solyc03g096170.1 145 1.2187500
## 6294 Solyc03g096530.1 22 0.8476821
## 6476 Solyc03g110850.1 1 1.1341463
## 7055 Solyc03g117880.1 769 1.0705882
## 7685 Solyc04g008310.1 1102 0.9830149
## 8062 Solyc04g018210.1 54 0.7954545
## 8065 Solyc04g024420.2 195 0.9890511
## 8070 Solyc04g024690.1 25 0.6496350
## 8074 Solyc04g024880.1 59 0.3733333
## 8113 Solyc04g028500.1 66 0.5776173
## 8127 Solyc04g040140.1 87 0.5433071
## 8135 Solyc04g045320.1 128 1.2435897
## 8181 Solyc04g049520.1 315 1.0841121
## 8197 Solyc04g049900.1 856 1.0727969
## 8241 Solyc04g051000.1 57 0.8461538
## 8287 Solyc04g052970.1 66 0.8846154
## 8347 Solyc04g055070.1 8 1.0928571
## 8677 Solyc04g074910.2 23 1.0000000
## 9358 Solyc05g006290.1 233 0.4068100
## 9437 Solyc05g007250.2 492 1.0000000
## 9663 Solyc05g010220.1 250 0.9232737
## 9674 Solyc05g010360.1 70 1.0118483
## 9873 Solyc05g014100.1 362 0.3647343
## 10044 Solyc05g023850.1 104 0.6029412
## 10068 Solyc05g025720.1 624 1.0692308
## 10150 Solyc05g046180.1 69 1.0000000
## 10228 Solyc05g050640.1 53 0.9408602
## 10381 Solyc05g052810.2 318 0.5255814
## 10439 Solyc05g053460.1 99 1.0370370
## 10864 Solyc06g008550.1 58 0.7043478
## 10961 Solyc06g011500.1 71 0.8878505
## 10975 Solyc06g017930.1 15 0.6832298
## 11076 Solyc06g043010.1 32 0.6553191
## 11129 Solyc06g049100.2 980 1.0347826
## 11411 Solyc06g060470.1 2 1.0414938
## 11524 Solyc06g062900.2 40 0.3236515
## 11590 Solyc06g064630.2 370 1.0000000
## 11685 Solyc06g065980.2 96 1.0000000
## 12471 Solyc06g082600.2 68 1.0000000
## 12866 Solyc07g007770.1 138 0.4929577
## 12979 Solyc07g009510.1 370 1.0000000
## 12989 Solyc07g014690.2 17 0.8848921
## 13002 Solyc07g016110.1 6 0.8452381
## 13034 Solyc07g017930.1 190 0.6250000
## 13072 Solyc07g021050.1 21 0.5917160
## 13079 Solyc07g021490.1 172 0.4699454
## 13159 Solyc07g039630.1 13 1.1021898
## 14050 Solyc07g064780.1 24 0.4800000
## 14314 Solyc08g006260.1 471 0.7976190
## 14564 Solyc08g015710.1 760 1.1536797
## 14584 Solyc08g016290.1 182 1.0188172
## 14619 Solyc08g023560.2 1 0.4531590
## 14640 Solyc08g036480.1 692 1.0582960
## 14743 Solyc08g061810.2 358 0.9494382
## 14792 Solyc08g062980.1 120 1.1464968
## 14941 Solyc08g067520.1 52 0.9674797
## 14949 Solyc08g067650.1 303 0.7388535
## 15031 Solyc08g069080.2 23 1.0000000
## 15057 Solyc08g074460.1 211 1.0868321
## 15669 Solyc08g082380.1 57 1.1188811
## 15730 Solyc08g083120.2 193 1.0000000
## 16011 Solyc09g009310.1 36 0.7797927
## 16257 Solyc09g014700.1 8 0.4285714
## 16341 Solyc09g020080.1 166 0.9132231
## 16358 Solyc09g030430.1 372 1.2943548
## 16411 Solyc09g055690.1 23 0.7156863
## 16440 Solyc09g057700.1 647 1.1433692
## 16493 Solyc09g061350.1 15 1.0636364
## 16501 Solyc09g061530.1 115 1.1142857
## 16554 Solyc09g064660.2 213 1.0000000
## 16650 Solyc09g066030.1 310 0.3950276
## 16942 Solyc09g082840.1 484 1.1594203
## 17084 Solyc09g090610.2 290 1.0000000
## 17144 Solyc09g091350.1 212 0.9142857
## 17444 Solyc10g006480.1 681 1.0000000
## 17587 Solyc10g008260.1 277 1.0308370
## 17636 Solyc10g008910.1 2 1.0000000
## 17724 Solyc10g012390.1 433 1.1666667
## 17790 Solyc10g026520.1 957 1.0612245
## 17819 Solyc10g044550.1 190 0.8170732
## 17839 Solyc10g045230.1 3 0.8400000
## 17859 Solyc10g046790.1 68 1.0875000
## 17956 Solyc10g050530.1 1092 1.0983146
## 18069 Solyc10g061970.1 27 1.0000000
## 18124 Solyc10g076170.1 21 0.4916201
## 18532 Solyc10g083280.1 184 1.0000000
## 18624 Solyc10g084480.1 94 1.0619469
## 19151 Solyc11g010230.1 70 1.0000000
## 19309 Solyc11g012380.1 60 0.8581081
## 19397 Solyc11g013550.1 1 1.0000000
## 19462 Solyc11g019860.1 297 0.9572368
## 19497 Solyc11g021130.1 16 0.4615385
## 19528 Solyc11g030670.1 8 0.9112426
## 19577 Solyc11g042470.1 209 0.3085847
## 19614 Solyc11g044610.1 45 0.5860215
## 19646 Solyc11g045370.1 4 1.0200000
## 19649 Solyc11g045510.1 18 0.5431472
## 19659 Solyc11g050860.1 303 1.1878788
## 19670 Solyc11g056540.1 131 1.2633333
## 19709 Solyc11g063590.1 588 1.0473934
## 20004 Solyc11g069730.1 6 0.9266055
## 20179 Solyc11g072860.1 114 1.0000000
## 20412 Solyc12g008480.1 26 0.3364780
## 20482 Solyc12g009330.1 167 1.0000000
## 20516 Solyc12g009870.1 247 1.0666667
## 20552 Solyc12g010350.1 3 0.7790698
## 20582 Solyc12g010760.1 49 1.0000000
## 20815 Solyc12g019600.1 63 0.7722772
## 20843 Solyc12g027710.1 55 0.3580247
## 20863 Solyc12g035300.1 27 0.4264151
## 20936 Solyc12g040270.1 18 0.7435897
## 20947 Solyc12g040550.1 150 1.1745455
## 21232 Solyc12g070170.1 1248 1.1776062
## 21236 Solyc12g077350.1 62 0.5458167
## 21635 Solyc12g099990.1 2 1.2066667- Solyc01g010050.2: Two overlapping LYC transcripts (note this is fixed when using FeatureCounts from subread)
- Solyc01g060020.2: Multiple overlapping LYC transcripts
- Solyc05g023780.1: Repetitive region
- Solyc08g015710.1: Very small region of homology
- Solyc11g056540.1: BLAT did not find a match
How to deal with this?
Many of these issues could be dealt with by
- Eliminating genes with overlapping LYC to LYC or PEN to LYC transcripts.
- Using the BLAT results to eliminate transcripts with poor homology.
Original
## [1] 0.9376397With bad annotations removed
Genes where more than one S.lyc or more than one S.pen annotation overlap are removed.
with(pen.count.comparison.1[pen.count.comparison.1$flag=="none",],cor(count.known,count.mapped))## [1] 0.9814712Pretty good!
Mapping to cDNA reference with kallisto
installation
mac command line
brew install kallistobuild index
only needs to be done once:
kallisto index -i ITAG2.4._cds.pen.orthlogsonly.31.kai ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fastaBut I wonder if different kmers would give different results
For kallisto fasta needs to be converted to fastq
Download converter
gzcat spen_sim_2/sample_01_renamed.fasta.gz | perl ~/bin/fasta_to_fastq.pl - | gzip > spen_sim_2/sample_01_renamed.fastq.gz
gzcat slyc_sim_2/sample_01_renamed.fasta.gz | perl ~/bin/fasta_to_fastq.pl - | gzip > slyc_sim_2/sample_01_renamed.fastq.gzrun kallisto
RunKallisto(fasta = "spen_sim_2/sample_01_renamed.fastq.gz", index = "ITAG2.4._cds.pen.orthlogsonly.31.kai", dir = "spen_sim_2/kallisto31" )Load in mapped counts
pen.mapped.counts <- GetMappedCounts(dir = "spen_sim_2/kallisto", type="kallisto-transcripts")S. pennellii
Compare known to mapped counts
Remove overlapping genes and plot
Genes with more than one S.lyc or more than one S.pen annotation overlap are removed.
Pretty good!
Kallisto with 21nt kmers
build index
only needs to be done once:
kallisto index -k 21 -i ITAG2.4._cds.pen.orthlogsonly.21.kai ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fastarun kallisto
RunKallisto(fasta = "spen_sim_2/sample_01_renamed.fastq.gz", index = "ITAG2.4._cds.pen.orthlogsonly.21.kai", dir = "spen_sim_2/kallisto21" )Load in mapped counts
pen.mapped.counts <- GetMappedCounts(dir = "spen_sim_2/kallisto21", type="kallisto-transcripts")S. pennellii
Compare known to mapped counts
Remove overlapping genes and plot
Genes with more than one S.lyc or more than one S.pen annotation overlap are removed.
Pretty good!
Optimize Kallisto kmer
Idea
Lowering the kallisto kmer improved the correlation between known and mapped counts
What is the best kmer?
In this section I will try a bunch of kmers
Build kalliso indexes for different kmers.
#only run once...it will be slow!
library(snowfall)
kmers <- c(seq(11,19,2),seq(23,29,2)) #21 and 31 already done
sfInit(cpu=min(kmers,12),parallel = TRUE)
sfClusterApply(kmers, function(k) {
index.name <- paste("ITAG2.4._cds.pen.orthlogsonly.",k,".kai",sep="")
system(paste("kallisto index -k", k,
" -i", index.name,
"~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_cds.pen.orthologs.only.fasta"))})
sfStop()Run Kallisto on the different indicies
library(snowfall)## Loading required package: snow##
## Attaching package: 'snow'## The following objects are masked from 'package:BiocGenerics':
##
## clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
## clusterExport, clusterMap, clusterSplit, parApply, parCapply,
## parLapply, parRapply, parSapply## The following objects are masked from 'package:parallel':
##
## clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
## clusterExport, clusterMap, clusterSplit, makeCluster,
## parApply, parCapply, parLapply, parRapply, parSapply,
## splitIndices, stopClusterindicies <- dir(pattern="[0-9]\\.kai")
sfInit(cpu=2,parallel = TRUE)## Warning in searchCommandline(parallel, cpus = cpus, type = type,
## socketHosts = socketHosts, : Unknown option on commandline:
## rmarkdown::render('/Users/jmaloof/Documents/Lab~+~Notebook~+~support/2015/
## rnaseq_simulations/Spen_rnaseq_simulation_full.Rmd',~+~~+~encoding~+~## R Version: R version 3.2.3 (2015-12-10)## snowfall 1.84-6.1 initialized (using snow 0.4-1): parallel execution on 2 CPUs.sfSource("Rnaseq_sim_helper_functions.R")## Source Rnaseq_sim_helper_functions.R loaded.## Source Rnaseq_sim_helper_functions.R loaded in cluster.##
## > RunStar <- function(fasta, prefix, param.file = "../STAR.params.whitney.1",
## + args = "", dir = ".", twopassMode = "Basic", n = 12) {
## + old. .... [TRUNCATED]
##
## > RunKallisto <- function(fasta, index, dir) {
## + bampath <- file.path(dir, "kallisto.bam")
## + system(paste("kallisto quant --single --plaintext ..." ... [TRUNCATED]
##
## > GetMappedCounts <- function(prefix = NA, dir = ".",
## + type = "STAR", gff = "~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/ITAG2.4_gene_model ..." ... [TRUNCATED]
##
## > CompareCounts <- function(known.counts, mapped.counts = NA,
## + title = NULL, plot = TRUE, chrom.separate = TRUE, correlation = TRUE,
## + retu .... [TRUNCATED]
##
## > PSL2Granges <- function(file) {
## + psl.data <- read.delim(file, header = FALSE, skip = 5)
## + psl.header <- make.names(apply(read.delim(file, h .... [TRUNCATED]sfExport("pen.known.counts","lyc.lyc.overlaps","pen.pen.overlaps","pen.gene.length","lyc.gene.length")
results.combined <- sfLapply(indicies,function(i) {
kmer <- sub("ITAG2\\.4\\._cds\\.pen\\.orthlogsonly\\.([0-9]{2})\\.kai","\\1",i)
dir.out <- paste("spen_sim_2/kallisto",kmer,sep="")
results <- list()
results$kmer <- as.numeric(kmer)
results$time <- system.time(RunKallisto(fasta = "spen_sim_2/sample_01_renamed.fastq.gz",
index = i,
dir = dir.out))
pen.mapped.counts <- GetMappedCounts(dir = dir.out, type="kallisto-transcripts")
pen.count.comparison <- CompareCounts(pen.known.counts,pen.mapped.counts,plot = FALSE,correlation = FALSE)
pen.count.comparison$flag <- "none"
pen.count.comparison <- within(pen.count.comparison,{
flag[pen.count.comparison$lyc.id %in% lyc.lyc.overlaps] <- "lyc.lyc.overlap"
flag[pen.count.comparison$lyc.id %in% pen.pen.overlaps] <- "pen.pen.overlap"
}
)
results$corr.all <- with(pen.count.comparison,c(cor(count.known, count.mapped),cor(count.known,count.mapped,method="spearman")))
results$corr.bad.removed <- with(pen.count.comparison[pen.count.comparison$flag=="none",],
c(cor(count.known, count.mapped),cor(count.known,count.mapped,method="spearman")))
return(results)
})
sfStop()##
## Stopping clusterkalliso kmer effects
So, kmer=19 is the best
Mapping to genomic with subread
Installation
Download subread
untar and unzip it, move binaries to /usr/local/bin (or make symbolic links)
# in R
install.pacakges("Rsubread")Build Indexes
library(Rsubread)
buildindex("Slyc_Chromo2.5_subread_index","/Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/S_lycopersicum_chromosomes.2.50.fa") #note does not do tilde expansion
# 5.5 minutesMap
system.time(align("Slyc_Chromo2.5_subread_index",
"spen_sim_2/sample_01_renamed.fastq.gz",
output_file=paste("spen_sim_2/sample_01_renamed.fastq.gz","subread","default","BAM",sep="."),
nthreads = 2))On Royce, with 2 threads:
| user | system | elapsed |
|---|---|---|
| 310.463 | 32.216 | 211.111 |
Get Counts
pen.mapped.counts <- GetMappedCounts(dir="spen_sim_2/",type = "featureCounts",bam = "sample_01_renamed.fastq.gz.subread.default.BAM")##
## ========== _____ _ _ ____ _____ ______ _____
## ===== / ____| | | | _ \| __ \| ____| /\ | __ \
## ===== | (___ | | | | |_) | |__) | |__ / \ | | | |
## ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
## ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
## ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
## Rsubread 1.20.2
##
## //========================== featureCounts setting ===========================\\
## || ||
## || Input files : 1 BAM file ||
## || S spen_sim_2//sample_01_renamed.fastq.gz.sub ... ||
## || ||
## || Output file : ./.Rsubread_featureCounts_pid88215 ||
## || Annotations : /Users/jmaloof/Sequences/ref_genomes/tomato/ ... ||
## || ||
## || Threads : 2 ||
## || Level : meta-feature level ||
## || Paired-end : no ||
## || Strand specific : no ||
## || Multimapping reads : not counted ||
## || Multi-overlapping reads : counted ||
## || Read orientations : fr ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//
##
## //================================= Running ==================================\\
## || ||
## || Load annotation file /Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2 ... ||
## || Features : 160001 ||
## || Meta-features : 34725 ||
## || Chromosomes/contigs : 13 ||
## || ||
## || Process BAM file spen_sim_2//sample_01_renamed.fastq.gz.subread.defaul ... ||
## || Single-end reads are included. ||
## || Assign reads to features... ||
## || Total reads : 9901756 ||
## || Successfully assigned reads : 8803449 (88.9%) ||
## || Running time : 0.20 minutes ||
## || ||
## || Read assignment finished. ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//Compare counts
Compare known to mapped counts
Remove overlapping genes and compare
Genes with more than one S.lyc or more than one S.pen annotation overlap are removed.
map with subread allowing more mismatches (5)
system.time(align("Slyc_Chromo2.5_subread_index",
"spen_sim_2/sample_01_renamed.fastq.gz",
output_file=paste("spen_sim_2/sample_01_renamed.fastq.gz","subread","5MM","BAM",sep="."),
nthreads = 2,
maxMismatches = 5))On Royce, with 2 threads:
| user | system | elapsed |
|---|---|---|
| 315.772 | 29.543 | 221.174 |
pen.mapped.counts <- GetMappedCounts(dir="spen_sim_2/",type = "featureCounts",bam = "sample_01_renamed.fastq.gz.subread.5MM.BAM")##
## ========== _____ _ _ ____ _____ ______ _____
## ===== / ____| | | | _ \| __ \| ____| /\ | __ \
## ===== | (___ | | | | |_) | |__) | |__ / \ | | | |
## ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
## ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
## ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
## Rsubread 1.20.2
##
## //========================== featureCounts setting ===========================\\
## || ||
## || Input files : 1 BAM file ||
## || S spen_sim_2//sample_01_renamed.fastq.gz.sub ... ||
## || ||
## || Output file : ./.Rsubread_featureCounts_pid88215 ||
## || Annotations : /Users/jmaloof/Sequences/ref_genomes/tomato/ ... ||
## || ||
## || Threads : 2 ||
## || Level : meta-feature level ||
## || Paired-end : no ||
## || Strand specific : no ||
## || Multimapping reads : not counted ||
## || Multi-overlapping reads : counted ||
## || Read orientations : fr ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//
##
## //================================= Running ==================================\\
## || ||
## || Load annotation file /Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2 ... ||
## || Features : 160001 ||
## || Meta-features : 34725 ||
## || Chromosomes/contigs : 13 ||
## || ||
## || Process BAM file spen_sim_2//sample_01_renamed.fastq.gz.subread.5MM.BA ... ||
## || Single-end reads are included. ||
## || Assign reads to features... ||
## || Total reads : 9901756 ||
## || Successfully assigned reads : 8804555 (88.9%) ||
## || Running time : 0.19 minutes ||
## || ||
## || Read assignment finished. ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//Compare counts
Compare known to mapped counts
Remove overlapping genes and compare
Genes with more than one S.lyc or more than one S.pen annotation overlap are removed.
Map with bowtie2
Installation
brew install bowtie2Make bowtie index
bowtie2-build --threads 2 ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/S_lycopersicum_chromosomes.2.50.fa ~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/S_lycopersicum_chromosomes.2.50.faMap
system.time(RunBowtie2(fastq = "spen_sim_2/sample_01_renamed.fastq.gz",
index = "~/Sequences/ref_genomes/tomato/ITAG2.4_Chromo2.5/S_lycopersicum_chromosomes.2.50.fa",
dir = "spen_sim_2/"))Royce with 2 threads user | system | elapsed ——–|——–|——–
622.348 | 13.297 | 300.922
Get counts
pen.mapped.counts <- GetMappedCounts(dir="spen_sim_2/",type = "featureCounts",bam = "bowtie2.bam")##
## ========== _____ _ _ ____ _____ ______ _____
## ===== / ____| | | | _ \| __ \| ____| /\ | __ \
## ===== | (___ | | | | |_) | |__) | |__ / \ | | | |
## ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
## ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
## ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
## Rsubread 1.20.2
##
## //========================== featureCounts setting ===========================\\
## || ||
## || Input files : 1 BAM file ||
## || S spen_sim_2//bowtie2.bam ||
## || ||
## || Output file : ./.Rsubread_featureCounts_pid89516 ||
## || Annotations : /Users/jmaloof/Sequences/ref_genomes/tomato/ ... ||
## || ||
## || Threads : 2 ||
## || Level : meta-feature level ||
## || Paired-end : no ||
## || Strand specific : no ||
## || Multimapping reads : not counted ||
## || Multi-overlapping reads : counted ||
## || Read orientations : fr ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//
##
## //================================= Running ==================================\\
## || ||
## || Load annotation file /Users/jmaloof/Sequences/ref_genomes/tomato/ITAG2 ... ||
## || Features : 160001 ||
## || Meta-features : 34725 ||
## || Chromosomes/contigs : 13 ||
## || ||
## || Process BAM file spen_sim_2//bowtie2.bam... ||
## || Single-end reads are included. ||
## || Assign reads to features... ||
## || Total reads : 9901756 ||
## || Successfully assigned reads : 9107218 (92.0%) ||
## || Running time : 0.29 minutes ||
## || ||
## || Read assignment finished. ||
## || ||
## \\===================== http://subread.sourceforge.net/ ======================//Compare counts
Compare known to mapped counts
Remove overlapping genes and compare
Genes with more than one S.lyc or more than one S.pen annotation overlap are removed.
